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RPSD
About This Database

Database Description

General information of database
Database name
RPSD
Alternative name
Rice Protein Structure Database
DOI
10.18908/lsdba.nbdc00749-000
Creator
Creator Name
Toshimasa Yamazaki
Creator Affiliation
National Institute of Agrobiological Sciences
Contact address
2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
Toshimasa Yamazaki
E-mail : rpsd ad
Database classification

Structure Databases - Protein structure

Organism
Taxonomy Name
Oryza sativa
Taxonomy ID
Taxonomy Name
Arabidopsis thaliana
Taxonomy ID
Taxonomy Name
Sorghum bicolor
Taxonomy ID
Taxonomy Name
Zea mays
Taxonomy ID
Taxonomy Name
Hordeum vulgare
Taxonomy ID
Taxonomy Name
Triticum aestivum
Taxonomy ID
Taxonomy Name
Glycine max
Taxonomy ID
Database description

We have determined the three-dimensional structures of the protein of seven kinds of plants such as rice, and have put together the result and related informations. This database contains the basic information of the protein, that assumed Protein Data Bank a source of information, experimental methods used for the structure determination, literature information, sequence, the image of the three-dimensional structures, and so on.

Features and manner of utilization of database

A purpose of this study is to elucidate the correlation of "the three-dimensional structures and a function and phenotype of the protein" and the mechanisms of functional expression of the protein, in the resolving power of the atomic level, about the gene which is assumed to be important academically or agriculturally and industrially, utilizing  gene information, full-length cDNA, and so on, which was provided by the rice genome project, for general elucidation of the rice plant function and development of a policy to use a useful gene effectively. In this site, you can search the three-dimensional structures of the protein listed by each plant.

License
CC BY-SA Detail
Background and funding
Name
An isolation and function elucidation using structure analysis of the protein (2002-2004, National Institute of Agrobiological Science (NIAS))
Reference(s)
-
Original website information
Database maintenance site

National Institute of Agrobiological Sciences

*The original website is unavailable.

URL of the original website
-
Operation start date
-
Last update date
2005/2/14
URL of the portal site
http://agrid.dna.affrc.go.jp/cgi-bin/sogo.cgi?class=719&lang=en
Whole data download
-
Referenced database
Entry list
Not available
Query search
Not available
Web services
Not available
URL of Web services
-
Need for user registration
Not available