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Data description
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Data name
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YAC clone information
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DOI
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10.18908/lsdba.nbdc00318-06-002
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Description of data contents
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YAC clones selected with DNA markers
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Data file
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File name :
rgp_physicalmap_yac_clones.zip
File URL :
File size :
18.7 KB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/rgp_physicalmap_yac_clones#en
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Data acquisition method
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YAC clones selected with RGP DNA markers in each chromosome are listed. DNA marker names are different to those in "YAC contig information". For example, P0061 and P61 represents the same marker.
Please refer to the following literature for the acquisition method of YAC clone data.
Chromosome 1 : Wang et.al (1996), DNA Research, 3(5): 291-296.
Chromosome 2 : Umehara et.al (1997), DNA Research, 4(2): 127-131.
Chromosomes 3 and 11 : Tanoue et.al (1997), DNA Research, 4(2): 133-140.
Chromosomes 4 and 7 : Koike et.al (1997), DNA Research, 4(1): 27-33.
Chromosome 5 : Saji et.al (1996), DNA Research, 3(5): 297-302.
Chromosome 6 : Umehara et.al (1996), Genome Research, 6(10): 935-942.
Chromosomes 8 and 9 : Antonio et.al (1996), DNA Research, 3(6): 393-400.
Chromosomes 10 and 12 : Shimokawa et.al (1996), DNA Research, 3(6): 401-406.
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Data analysis method
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-
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Number of data entries
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1,136 entries
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Data detail
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Data item
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Description
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| Chrom. No. |
Chromosome number |
| Region |
Region number |
| Physical map image |
The file name of rice physical map |
| Order |
Linkage order |
| Marker |
Marker name |
| Distance (cM) |
The genetic distance from the previous marker (cM) |
| YAC clone1 |
YAC clone 1The YAC name followed by "c" shows that the YAC is a chimera. |
| YAC clone2 |
YAC clone 2 |
| YAC clone3 |
YAC clone 3 |
| YAC clone4 |
YAC clone 4 |
| YAC clone5 |
YAC clone 5 |
| YAC clone6 |
YAC clone 6 |
| YAC clone7 |
YAC clone 7 |
| YAC clone8 |
YAC clone 8 |
| YAC clone9 |
YAC clone 9 |
| YAC clone10 |
YAC clone 10 |
| YAC clone11 |
YAC clone 11 |
| YAC clone12 |
YAC clone 12 |
| YAC clone13 |
YAC clone 13 |
| YAC clone14 |
YAC clone 14 |
| YAC clone15 |
YAC clone 15 |
| YAC clone16 |
YAC clone 16 |
| YAC clone17 |
YAC clone 17 |
| YAC clone18 |
YAC clone 18 |
| YAC clone19 |
YAC clone 19 |
| YAC clone20 |
YAC clone 20 |
| YAC clone21 |
YAC clone 21 |
| YAC clone22 |
YAC clone 22 |
| YAC clone23 |
YAC clone 23 |
| YAC clone24 |
YAC clone 24 |
| YAC clone25 |
YAC clone 25 |
| YAC clone26 |
YAC clone 26 |
| YAC clone27 |
YAC clone 27 |
| YAC clone28 |
YAC clone 28 |
| YAC clone29 |
YAC clone 29 |
| YAC clone30 |
YAC clone 30 |
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