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Life Science Database Archive
RGP physicalmap

YAC clone information

Data detail

info Data name YAC clone information
info DOI 
info Description of data contents 

YAC clones selected with DNA markers

info Data file 
File name:
rgp_physicalmap_yac_clones.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/rgp-physicalmap/LATEST/rgp_physicalmap_yac_clones.zip
File size:
18.7 KB
info Simple search URL 
info Data acquisition method 

YAC clones selected with RGP DNA markers in each chromosome are listed. DNA marker names are different to those in "YAC contig information". For example, P0061 and P61 represents the same marker.

 

Please refer to the following literature for the acquisition method of YAC clone data.

 

Chromosome 1 : Wang et.al (1996), DNA Research, 3(5): 291-296.
Chromosome 2 : Umehara et.al (1997), DNA Research, 4(2): 127-131.
Chromosomes 3 and 11 : Tanoue et.al (1997), DNA Research, 4(2): 133-140.
Chromosomes 4 and 7 : Koike et.al (1997), DNA Research, 4(1): 27-33.
Chromosome 5 : Saji et.al (1996), DNA Research, 3(5): 297-302.
Chromosome 6 : Umehara et.al (1996), Genome Research, 6(10): 935-942.
Chromosomes 8 and 9 : Antonio et.al (1996), DNA Research, 3(6): 393-400.
Chromosomes 10 and 12 : Shimokawa et.al (1996), DNA Research, 3(6): 401-406.

info Data analysis method -
info Number of data entries 

1,136 entries

Data itemDescription
Chrom. No. Chromosome number
Region Region number
Physical map image The file name of rice physical map
Order Linkage order
Marker Marker name
Distance (cM) The genetic distance from the previous marker (cM)
YAC clone1 YAC clone 1
The YAC name followed by "c" shows that the YAC is a chimera.
YAC clone2 YAC clone 2
YAC clone3 YAC clone 3
YAC clone4 YAC clone 4
YAC clone5 YAC clone 5
YAC clone6 YAC clone 6
YAC clone7 YAC clone 7
YAC clone8 YAC clone 8
YAC clone9 YAC clone 9
YAC clone10 YAC clone 10
YAC clone11 YAC clone 11
YAC clone12 YAC clone 12
YAC clone13 YAC clone 13
YAC clone14 YAC clone 14
YAC clone15 YAC clone 15
YAC clone16 YAC clone 16
YAC clone17 YAC clone 17
YAC clone18 YAC clone 18
YAC clone19 YAC clone 19
YAC clone20 YAC clone 20
YAC clone21 YAC clone 21
YAC clone22 YAC clone 22
YAC clone23 YAC clone 23
YAC clone24 YAC clone 24
YAC clone25 YAC clone 25
YAC clone26 YAC clone 26
YAC clone27 YAC clone 27
YAC clone28 YAC clone 28
YAC clone29 YAC clone 29
YAC clone30 YAC clone 30