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Statistics information of rice EST mapping results

Data description
Data name
Statistics information of rice EST mapping results
DOI
10.18908/lsdba.nbdc00318-04-001
Description of data contents
Summary of Rice EST Mapping Results per each chromosome. The map is composed of 2782 YAC clones, containing 364 YAC contigs with 6591 assigned EST sites from 6421 unique sequences, and covers 80.8% of the rice genome.
Data file
File name :
rgp_estmap2001_main.zip
File URL :
File size :
597 B
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/rgp_estmap2001_main#en
Data acquisition method

Numeric data calculated during construction of a YAC-Based Rice Transcript Map.

Data analysis method

Number of YAC clones and contigs that was used to make rice EST mapping of each type of Chromosome were counted. Also, the coverage and average EST density was calculated.

Number of data entries

14 entries

Data detail
Data item Description
Chrom. No.

Chromosome number(UN: Chromosome unknown)

YAC Clones

Number of YAC clones

YAC Contigs

Number of YAC contigs

Total Length of YAC Contigs (Mb)

Total length of YAC contigs (Mb)

Coverage (%)

Coverage (%) = Total length (Mb) of YAC contigs / ( genetic length of chromosome (cM) x 430 (Mb) / 1530.4 (cM) ) x 100

EST Sites

Number of EST sites

Ave EST Density (EST/100 kb)

Average EST density (EST/100 kb) = Number of ESTs / total length of YAC contigs

Contig Image File

Image file name of chromosomal distribution