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Life Science Database Archive
RGP estmap2001

Statistics information of rice EST mapping results

Data detail

info Data name Statistics information of rice EST mapping results
info DOI 
info Description of data contents 

Summary of Rice EST Mapping Results per each chromosome.
The map is composed of 2782 YAC clones, containing 364 YAC contigs with 6591 assigned EST sites from 6421 unique sequences, and covers 80.8% of the rice genome.

info Data file 
File name:
rgp_estmap2001_main.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/rgp-estmap2001/LATEST/rgp_estmap2001_main.zip
File size:
597 B
info Simple search URL 
info Data acquisition method 

Numeric data calculated during construction of a YAC-Based Rice Transcript Map.

info Data analysis method 

Number of YAC clones and contigs that was used to make rice EST mapping of each type of Chromosome were counted. Also, the coverage and average EST density was calculated.

info Number of data entries 

14 entries

Data itemDescription
Chrom. No. Chromosome number
(UN: Chromosome unknown)
YAC Clones Number of YAC clones
YAC Contigs Number of YAC contigs
Total Length of YAC Contigs (Mb) Total length of YAC contigs (Mb)
Coverage (%) Coverage (%)
= Total length (Mb) of YAC contigs / ( genetic length of chromosome (cM) x 430 (Mb) / 1530.4 (cM) ) x 100
EST Sites Number of EST sites
Ave EST Density (EST/100 kb) Average EST density (EST/100 kb)
= Number of ESTs / total length of YAC contigs
Contig Image File Image file name of chromosomal distribution