About This Database

GenBank blastx search result

Data description

Data name

DOI

10.18908/lsdba.nbdc00120-008

Description of data contents

Results of blastx searches against GenBank amino acid sequences

Data file

File name :

kome_genbank_blastx_search_result.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_genbank_blastx_search_result.zip

File size :

34 MB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/kome_genbank_blastx_search_result#en

Data acquisition method

Performed blastx searches against Genbank amino acid sequences.

Data analysis method

Performed homology searches against sequences obtained from NCBI GenBank Release 150.0 (15/08/2005) using the blastx program (blast2.2.12).
Sequences useed in the searches were located in the following 10 out of 18 GenBank divisions.
1. PRI - primate sequences
2. ROD - rodent sequences
3. MAM - other mammalian sequences
4. VRT - other vertebrate sequences
5. INV - invertebrate sequences
6. PLN - plant, fungal, and algal sequences
7. BCT - bacterial sequences
8. VRL - viral sequences
9. PHG - bacteriophage sequences
13. PAT - patent sequences
The results are filtered with Expect values lower than 1e-10.

Number of data entries

1,247,656 entries

Data detail

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the blastx search result
ACCESSION	Accession number of the GenBank entry
DEFINITION	Definition of the GenBank clone
DIVISION	GenBank division
SCORE	Score in the blastx search result
EXPECT	Expect value in the blastx search result
IDENTITIES	Identities in the blastx search result
FRAME	Reading frame of the full-length cDNA clone