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About This Database

ORF information

Data description
Data name
ORF information
DOI
10.18908/lsdba.nbdc00120-016
Description of data contents
Information about the longest ORFs
Data file
File name :
kome_orf_infomation.zip
File URL :
File size :
526 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_orf_infomation#en
Data acquisition method

Showing information about the predicted ORFs of the full-length cDNA clones, such as start and end positions.

Data analysis method

The longest ORF is predicted by finding all the start and stop codons from the cDNA sequence and picking a pair of start and stop codons that makes the longest distance.

Number of data entries

37,073 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

FRAME_NO

Frame number

START_POSITION

Start position of the longest ORF

STOP_POSITION

End position of the longest ORF

LENGTH

Length of the longest ORF

OCCUPATION

Ratio of the ORF length to the cDNA sequence length