About This Database
Cluster based on sequence comparison of homologous proteins of 95 organism species
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Data name
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Cluster based on sequence comparison of homologous proteins of 95 organism species | ||||||||||||||||||||||||||||||||||||
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DOI
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10.18908/lsdba.nbdc00464-002 |
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Description of data contents
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Clustering was performed by the method in which the round-robin BLAST search of the above amino acid sequence data is performed, the E-value and the overlap score (the All-against-all BLASTP search of the above amino acid sequence data, and heuristic estimation of a similarity threshold for homologs of each protein by entropy-optimized organism count method (<a href="http://gclust.c.u-tokyo.ac.jp/" rel="external">Bioinformatics 2009 Mar 1;25(5):599-605.</a>). The data are given in a CSV format text file. | ||||||||||||||||||||||||||||||||||||
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Data file
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File name :
gclust_cluster.zip
File URL :
File size :
8.72MB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/gclust_cluster#en | ||||||||||||||||||||||||||||||||||||
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Data acquisition method
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Sequence data stated in "Amino acid sequences of predicted proteins and their annotation for 95 organism species". |
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Data analysis method
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All-against-all BLASTP search of the above amino acid sequence data, and heuristic estimation of a similarity threshold for homologs of each protein by entropy-optimized organism count method (Bioinformatics 2009 Mar 1;25(5):599-605.). |
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Number of data entries
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206,764 entries |
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