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About This Database

Summary_CAGEScan

Data description
Data name
Summary_CAGEScan
DOI
10.18908/lsdba.nbdc01389-016.V003
Description of data contents
The summary of CAGEscan experiments assembled in every DNA sequence library
Data file
File name :
fantom5_summary_cagescan.zip
File URL :
File size :
4.64 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/fantom5_summary_cagescan#en
Data acquisition method

CAGEscan (http://fantom.gsc.riken.jp/protocols/nanocage.html)

Data analysis method

-

Number of data entries

61 entries

Data detail
Data item Description
Library ID

DNA sequence library ID

Raw

Measured reads

Removed by extraction

Removed reads by extraction

Extracted

Extracted reads by analysis

Removed by artifacts

Removed artifatcts

Filtered for artifact

Reads filterd for artifacts

Removed by rRNA

Removed reads as rRNA

Filtered for rRNA

Reads filterd for rRNAs

Non alignment

Reads not mapped on genome

Genome mapped

Reads mapped on genome

Duplicated

Duplicated reads

Uniquely mapped

Unique reads

Inproperly mapped pairs

Read pairs inproperly mapped on genome

Properly mapped pairs

Read pairs properly mapped on genome

Total pairs

Total pairs

Exon

Pairs on exon

Intergenic

Pairs on intergenic

Promoter

Pairs on promoter