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Life Science Database Archive
ConfC

Supplement data for conformation changes by some binding

Data detail

info Data name Supplement data for conformation changes by some binding
info DOI 
info Description of data contents 

The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed.The information about a regions of structural change sekected with the Z score is stored.

info Data file 
File name:
confc_part.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/confc/LATEST/confc_part.zip
File size:
231 KB
info Simple search URL 
info Data acquisition method 

PDB (Protein Data Bank)

info Data analysis method 

The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed. Finally, the regions of structural change are selected with the Z score

info Number of data entries 

12,692 entries

Data itemDescription
confID ID of ConfAll table
siteNo Site number in residue number order
siteStart1 Dihedral angle number at the start of the site in the structure 1 (numbering starts at the second visible residue)
siteStartR1 Residue number at the start of the site in the structure 1
siteEnd1 Dihedral angle number at the end of the site in the structure 1
siteEndR1 Residue number at the end of the site in the structure 1
siteLength1 The longest site length in the structure 1
siteStart2 Dihedral angle number at the start of the site in the structure 2 (numbering starts at the second visible residue)
siteStartR2 Residue number at the start of the site in the structure 2
siteEnd2 Dihedral angle number at the end of the site in the structure 2
siteEndR2 Residue number at the end of the site in the structure 2
siteLength2 The longest site length in the structure 2
phiMax Maximum value of φchange
psiMax Maximum value of ψchange