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About This Database

Supplement data for conformation changes by some binding

Data description
Data name
Supplement data for conformation changes by some binding
DOI
10.18908/lsdba.nbdc00400-002
Description of data contents
The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed.The information about a regions of structural change sekected with the Z score is stored.
Data file
File name :
confc_part.zip
File URL :
File size :
231 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/confc_part#en
Data acquisition method

PDB (Protein Data Bank)

Data analysis method

The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed. Finally, the regions of structural change are selected with the Z score

Number of data entries

12,692 entries

Data detail
Data item Description
confID

ID of ConfAll table

siteNo

Site number in residue number order

siteStart1

Dihedral angle number at the start of the site in the structure 1 (numbering starts at the second visible residue)

siteStartR1

Residue number at the start of the site in the structure 1

siteEnd1

Dihedral angle number at the end of the site in the structure 1

siteEndR1

Residue number at the end of the site in the structure 1

siteLength1

The longest site length in the structure 1

siteStart2

Dihedral angle number at the start of the site in the structure 2 (numbering starts at the second visible residue)

siteStartR2

Residue number at the start of the site in the structure 2

siteEnd2

Dihedral angle number at the end of the site in the structure 2

siteEndR2

Residue number at the end of the site in the structure 2

siteLength2

The longest site length in the structure 2

phiMax

Maximum value of φchange

psiMax

Maximum value of ψchange