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About This Database

File list

Data description
Data name
File list
DOI
10.18908/lsdba.nbdc01558-002.V020
Description of data contents
A list of merged bed file and its metadata, including reference genome data, antigen, cell type, and identifier of merged experiments. See details here: <a href="https://github.com/inutano/chip-atlas/wiki#downloads_doc" target="_blank">https://github.com/inutano/chip-atlas/wiki#downloads_doc</a>
Data file
File name :
chip_atlas_file_list.zip
File URL :
File size :
20 MB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/chip_atlas_file_list#en
Data acquisition method

We have generated a list of this bed file automatically by processing data downloaded from Sequence Read Archive.

Data analysis method

See details of data processing here: https://github.com/inutano/chip-atlas/wiki

Number of data entries

138,344 entries

Data detail
Data item Description
File name

File name

Genome assembly

Genome assembly

Antigen class

Antigen class

Antigen

Antigen

Cell type class

Cell type class

Cell type

Cell type

Threshold

Threshold

Experimental IDs included

Experimental IDs included

Peak-call (BED)

Link to a BED9 + GFF3 format file concatenated and converted from the BED4-formatted peak-call data files of the experiments in the "Experimental IDs included".