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Life Science Database Archive
AcEST

AcEST(EST sequences of Adiantum capillus-veneris and their annotation)

Data detail

info Data name AcEST(EST sequences of Adiantum capillus-veneris and their annotation)
info DOI 
info Description of data contents 

EST sequence of Adiantum capillus-veneris and its annotation (clone ID, library name, Blastx search results, etc.) CSV format text file.

info Data file 
File name:
acest_est.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/acest/LATEST/acest_est.zip
File size:
110MB
info Simple search URL 
info Data acquisition method 

Capillary sequencer

info Data analysis method 

Functional annotation (Results of blastx search against UniProtKB/Swiss-Prot and UniProtKB/TrEMBL databases)

info Number of data entries 

Adiantum capillus-veneris ESTs: 30,540.

Data itemDescription
Clone id Clone ID of EST sequence of Adiantum capillus-veneris.
Library Library name
Length Number of bases
Definition Definition
Accession DDBJ accession number
Tissue type Name of the tissue from which the sequence is derived
Developmental stage Developmental stage
Sequence(60) Nucleotide sequence (line break after 60 characters)
sequence Nucleotide sequence (without line break)
||Homology search results|| 　
Swiss-Prot (release 56.9) Results of blastx search against Swiss-Prot (release 56.9)
UniProt ID of top hit in Swiss-Prot UniProt ID of the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9)
Definition Accession and definition of the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9). Link to Uniprot is provided in TogoDB.
Align length The alignment length between the query and the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9).
Score (bit) Score (bit) of the alignment between the query and the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9).
E-value E-value of the alignment between the query and the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9).
Report Results of blastx search against the UniProtKB/Swiss-Prot (release 56.9) database.
TrEMBL (release 39.9) Results of blastx search against TrEMBL (release 39.9)
UniProt ID of top hit in TrEMBL UniProt ID of the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9).
Definition Accession and definition of the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9). Link to Uniprot is provided in TogoDB.
Align length The alignment length between the query and the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9).
Score (bit) Score (bit) of the alignment between the query and the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9).
E-value E-value of the alignment between the query and the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9).
Report Results of blastx search against the UniProtKB/TrEMBL (release 39.9) database.