| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Mapping Pseudomolecule data detail | KOME | 10.18908/lsdba.nbdc00120-006 |
Detailed mapping information with the TIGR japonica Pseudomolecules |
kome_mapping_pseudomolecule_data_detail.zip
(2.5 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_mapping_pseudomolecule_data_detail#en |
The full-length cDNA clones were mapped to the TIGR japonica Pseudomolecules. |
161,654 entries |
Data detail
open_in_full
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| Memsat search result | KOME | 10.18908/lsdba.nbdc00120-026 |
Results of transmembrane region predictions |
kome_memsat_search_result.zip
(209 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_memsat_search_result#en |
The MEMSAT program was used for the predictions. |
Performed transmembrane region predictions using the MEMSAT program. |
37,073 entries |
Data detail
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| Nucleotide Sequence | KOME | 10.18908/lsdba.nbdc00120-029 |
Nucleotide sequences of the full-length cDNA clones (trimmed sequences) |
CSV: kome_ine_full_sequence_db.zip
(19 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_ine_full_sequence_db#en | 37,132 entries |
Data detail
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| OPS index | KOME | 10.18908/lsdba.nbdc00120-032 |
Index of OPS (Oryza Partial Sequence).
|
kome_ops_index.zip
(2.6 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_ops_index#en | 382,787 entries |
Data detail
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| ORF information | KOME | 10.18908/lsdba.nbdc00120-016 |
Information about the longest ORFs |
kome_orf_infomation.zip
(526 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_orf_infomation#en |
Showing information about the predicted ORFs of the full-length cDNA clones, such as start and end positions. |
The longest ORF is predicted by finding all the start and stop codons from the cDNA sequence and picking a pair of start and stop codons that makes the longest distance. |
37,073 entries |
Data detail
open_in_full
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata