ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5930140 | RH-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◣ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L2
HEXA
MTRNR2L8
LAMP1
WASHC2A
WASHC2C
AP5Z1
CCDC200
NEURL2
CTSA
TNC
MSS51
CLCN7
ARID5B
WBP1L
ZNF668
C1QTNF1
AFAP1
GPSM1
KCNMA1
SUMF1
ZAR1L
BRCA2
STRA6
KAT5
TRMO
C20orf141
PVALEF
AATK
OR51T1
COMMD9
CLN3
SLC35A5
ATG3
ATP6V0D1
GFRA1
LTBP1
SULF1
FCRLA
FREM1
SNX16
GBA
GET4
MYPN
TNNT1
WDR74
CLIP1
SMYD1
DOK7
FHL2
MYOG
MUSTN1
HDAC9
TBL1X
HAGH
FAHD1
FLCN
B3GALT5
ARL14EP
ZNF507
MYBPC2
HRCT1
AMDHD2
SH2D7
PTPRD
PAFAH2
MTRNR2L9
NAGPA
TCF4
BLOC1S1
MFSD1
RRAGC
SBK2
MAP3K7CL
VPS33A
PDE4DIP
KDSR
TBC1D9
SMARCD2
MYLK4
SPNS1
RPS7
NDUFA4
HNRNPH2
GLA
ITGB3BP
EFCAB7
RASGRP3
BAX
CREB5
RYR1
ANKRD13A
UBE2Q1
SYNPO2L
ANKRD1
RMND1
ARMT1
TMEM167B
CCN2
BLCAP
FAM200B
ALK
HES1
UCHL5
RO60
AMPD3
INTS10
NAV2
SSBP1
KDM3A
FLRT3
CDK4
EYA1
PPP6R1
SLC44A1
OPRD1
ACOT9
SLC25A34
MYL12A
KANSL3
S100A2
MXRA7
SPATC1L
PTK6
TNNT2
NAPA
ZBTB18
SREBF1
RBPJ
VTA1
NMBR
NPEPL1
CNN3
MAST4
MINDY2
G2E3
SEMA3D
MAPK10
YARS1
S100PBP
ACVR1
INTS12
GSTCD
MCOLN1
RGS12
SYTL2
LRRC17
USPL1
HMGB1
ZCCHC24
STYXL2
SSTR5
ZNF335
ABLIM1
KDM1A
NUDCD3
CCNG2
CGGBP1
C3orf38
G6PC3
TLN2
BTG2
SYTL3
MYO18A
ABHD2
KLHL12
IFNAR2
PPP1R3D
FAM217B
SNRPB2
ATP6V1C1
PBK
MED18
SERP1
EIF2A
MAMSTR
ERI1
UTP3
SUPT7L
SLC4A1AP
CBWD5
CBWD3
ODF2L
SEM1
RPA3
HOXC13
BCAT1
TDRP
TACR3
TNNC2
SLC25A26
TNPO3
CASD1
ST7
KANSL1
MTHFD2L
CEP162
WRN
PURG
MDM2
RAD9A
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTBP
MRPL13
TBC1D19
COMMD4
NCAM1
VAMP5
TRIM62
CCNI
ASB18
COX7A2
PROSER1
NHLRC3
DZIP3
CIP2A
RAP1B
ANKRD12
SSBP2
TMBIM4
RRAS
THAP1
VPS11
RPUSD4
FAM118B
NOXO1
CDC42EP3
SLC4A2
CDK5
PIP4P1
MARCHF8
SLF2
RRP15
PPIP5K2
TANK
CHMP2B
RBM48
PEX1
TPP1
CRYAB
E2F6
DVL2
FIP1L1
CAND1
UVRAG
FITM1
CCDC174
PCBP2
RRN3
PLEKHS1
MNAT1
ATP6V1H
SMAD3
SPATA9
RHOBTB3
MTF2
AZIN1
TSPAN31
MAP3K7
GRN
UBB
NUP42
DARS1
MUSK
PSMA5
PIH1D2
NKAPD1
SH2B1
THAP10
LRRC49
LRRC58
RXRG
WBP11
STAT1
C12orf60
ZNF32
AFF1
SF3A3
FANCC
RPL22L1
GTF2B
WDR11
NFIA
CACYBP
THUMPD3
LFNG
PEX3
ADAT2
NAGLU
DENND2A
INPP4B
POLR2M
SH2D3C
TUBA1B
RTKN
ATP6V1G1
MSL2
N4BP2L2
CCDC146
TTC30A
PPP4R3B
EXOSC8
KCNF1
INMT
DNTTIP2
MTMR9
LOC100421372
HSPA14
DBF4B
CDNF
WASHC5
NSMCE2
CHRNG
KRTAP5-3
RBMS3
PNPT1
HNRNPD
OSGEP
APEX1
PLEKHD1
ARMC8
CCDC15
JMJD1C
MRPL44
EPS8
TBC1D30
GNS
TSR3
GNPTG
VGLL3
PPM1D
ZNF143
POMZP3
NUP205
RBBP5
ZNF519
SLC35E2A
VPS50
HEPACAM2
ANKRD40
COX16
NKAP
SELENOT
THADA
KLHL41
SH3BP4
RGMB
SGIP1
STK36
RNF25
STXBP5
PFDN4
MTMR14
TPM2
MYL12B
C2orf49
OTUD7B
TAMM41
POLR3F
DZANK1
TP53RK
TMEM230
ARHGAP24
KYAT1
SGO1
WASL
ZNF212
SCAF11
HSD17B11
MATR3
PPCDC
KLHL7
INO80C
ZNF609
ERCC6L2
ATP6V1E1
FREM2
DCAF10
MEF2C
TRIM55
PUM3
NUF2
MMADHC
ZNF397
ATP5F1E
SLC38A7
KAT6A
MTERF1
RHOJ
SETDB1
ZNF644
NKIRAS1
TNFRSF19
ZSCAN30
RPL15
SHPRH
WDPCP
MDH1
FAM240C
NEXN
CAV3
WARS2
ARID1A
CRBN
NUP107
RPL27
RTN4
MOB4
FAF1
KANSL1L
COMMD1
CITED2
RAB5B
HRC
PCOTH
MIPEP
DAB2
KRT80
CDC7
CFAP69
ZNF830
XRN1
CCT6B
CHMP7
MC2R
MTFR2
TTC26
FANCD2
CCAR2
ATP5MC1
ZNF343
ICE2
COMMD2
ATR
SLC38A2
TMF1
THOC1
UBXN2B
EPHA3
SMARCE1
TRMT5
SLC38A6
FDFT1
STX16
C3orf14
ZNF292
C5orf51
PSIP1
CCNC
DTNA
DMAC2
EIF4A2
METTL25
KRR1
CCDC59
SEMA3A
NXT1
NDE1
MFN1
MARF1
ARNT
RCHY1
PEX2
ZNF684
OGFRL1
CDC37L1
MEF2A
INKA2
DDX20
IPP
TM9SF4
HFM1
TMCO1
LIMCH1
HBS1L
CALM2
ERMARD
LEMD3
MAPRE2
EPM2A
ZCWPW2
AZI2
ZNF112
DMTF1
KRIT1
ANKIB1
PREPL
ERLIN2
CAMKMT
TBPL1
GPN1
CCDC121
ZMPSTE24
ANKRD50
SPAG8
RESF1
ALG9
CXXC5
RPS12
GNG11
HOMEZ
DMPK
HPS5
GTF2H1
TXLNB
CNOT2
CEP120
METTL15
KIF18A
CYCS
BECN1
MRPS23
NFIB
SERPINI1
PDCD10
ZER1
LSG1
CFLAR
RARB
NBPF1
SLC33A1
HBP1
SLC35A1
PUS10
PEX13
ATG4C
ZBTB6
SUGT1
RAB11A
NME1
ELOVL6
UFM1
FRA10AC1
FAM98B
PDAP1
PACRGL
BUD31
STARD4
GADD45A
TOMM5
TMEM39A
LARS2
GMNN
SCN3B
ACHE
COPS4
HIPK1
DHX8
COMMD3-BMI1
COMMD3
FZD1
MTRF1L
ZCCHC3
MYCBP2
CPED1
OPA1
VAMP4
SLC24A1
RPL5
COX10
ZCRB1
PPHLN1
RFX3
HNRNPDL
DDX5
CEP95
APBB2
ALLC
NRAS
ELAPOR2
HSPE1-MOB4
HSPE1
HSPD1
ING3
PARP2
ZFAND5
PATL1
TAF13
MAGI3
CTNNAL1
DUSP6
DGLUCY
NDUFV2
GPATCH8
RPS6KA5
PLEKHM3
OXNAD1
DPH3
NUP54
SHOC2
BBIP1
NDUFAF5
ESF1
PPIG
ANKRD18B
STAG1
THAP5
DNAJB9
ACTR3
STARD3NL
NEMF
ZRANB2
CCN1
MTHFR
CLCN6
YTHDF2
RIN2
ANO6
GCLM
LDHB
DLAT
TRIM45
SMG8
SCNM1
LYSMD1
EMSY
SLC35D1
NUDCD1
ATP2A1
TOP3A
SMCR8
ADGRL2
CCDC169-SOHLH2
CCDC169
ZNF780A
PCNP
HACL1
BTD
SLC9B2
PTPN1
PHF5A
KDM5A
CCDC77
ACO2
ETV4
PLSCR1
YTHDC1
TUBE1
RBMS1
FAM229B
ZNF780B
PLS3
RPL21
DNAJC24
DCDC1
MKRN2
FOXJ3
SECISBP2
CBLB
USP15
CRNKL1
CFAP61
PIGK
MTIF2
CTH
CCDC43
GTF2A1
DPH5
CLDN12
RNF6
TRMT6
MCM8
EHBP1
DBN1
EIF2AK3
SNIP1
PPP1R8
SRRM1
HMHB1
KDM8
PRKACB
PRDX6
SULF2
SLC9A8
DBT
INTS9
HMBOX1
TAF7
METTL7B
POMP
CSDE1
BRIP1
PNO1
ZNF226
WWP2
PSMC2
MRPS31
TEFM
AIFM1
ERLIN1
SCAND1
SLC2A12
GINS1
NAA38
NOTCH2
SLIRP
ALKBH1
RPS29
RPL24
USP16
TUT4
RHOT2
RBM12
PAPOLG
CPNE1
UBXN4
SUGCT
MPLKIP
PGM5
POLI
NBPF15
WNT2B
RAPH1
OAZ3
TFPT
RNF20
PRPF31
USP30
SAV1
RAB32
VPS45
CLUAP1
AGBL3
TRMT10C
SVOP
OSBPL1A
NCOA5
ETAA1
RTTN
TAF1A
POLR2K
KRCC1
GAR1
UTP23
HELB
ZBTB40
DNAJC19
TMEM242
MTREX
DHX29
GBE1
MCL1
SRBD1
TMA16
GOLPH3L
KIFAP3
SLC10A7
FBXO4
CYB5R4
LRIG3
GPRC5A
CDK6
LSM8
SRSF2
MRPL1
MFSD11
WDR77
ATP5PB
NACA
THAP9
SEC31A
MED4
RNF103-CHMP3
RMND5A
BAZ2A
C2orf73
TRMT61B
PLK2
MXD1
SP2
CCDC138
MIB1
DYNC2LI1
MYL4
NDC80
METTL4
SMAP1
DYRK2
CBWD6
RFC3
FAM3C
CSTF2T
CAVIN2
USP42
TTC23
LRRC28
GSTA4
AGPAT4
BMT2
PPIH
EYA4
PRKAG2
RPL11
PRPF38B
TNKS
FAM133B
RLF
CHD8
CBR3
ALKBH8
FRS2
CENPE
ZC3HC1
OSER1
PHIP
APBA1
SLC25A32
DCAF13
PNISR
FAM171B
TMEM209
FKBP14
SCRN3
CIR1
SMCHD1
UGP2
SMIM12
PPM1B
AIG1
PSMA2
PSMD14
CADM2
SCYL3
TOR1AIP1
TMEM101
TXNDC12
BTF3L4
NUP35
NBEAL1
EXOC4
VIRMA
PROS1
CDCA7L
RPL37
CEP70
RSRC1
RXYLT1
SUPT20H
RBM22
HERC5
ABCD3
ZC3H15
UBXN7
MKLN1
ZCCHC17
SNRNP40
CBX2
FAM126A
RTL8B
MRPL30
MITD1
RPAP2
GLMN
RAE1
UBE3C
PASD1
SUMO3
SH3GL1
ANKS6
HM13
DAZAP1
MIER1
SUSD4
SLK
ADGRB3
FGGY
ALG6
SHLD2
GLUD1
SUMO2
SCAMP5
PTBP1
ADAM23
OTUD7A
ARHGAP32
SMARCA4
BLOC1S4
RALGDS
NPEPPS
STAU2
MYCL
ACVR1B
SLC45A4
SBK1
AP2A2
NSD1
TFDP1
SKIL
GRHL1
PRKCA
SFXN1
RABGAP1L
CLSTN1
NSF
SAP30
FLYWCH1
TM2D2
ADAM9
CBX7
FBXL3
CHD7
FASN
UBE2E2
CACNA2D2
SPTAN1
MRPL45
PLEKHF2
KDM7A
ACTN4
PPP5D1
CALM3
DTNB
PHF21A
CFAP206
CUTC
COX15
C17orf58
PRKCE
FCHSD2
PATZ1
IKZF2
DIP2A
IGF1R
PCIF1
LASP1
UBXN2A
NFASC
USF2
UPF1
ATXN7L3
CHIC2
OAZ1
ADCY9
PTPRG
LYPLAL1
IRF2BP2
LCOR
EFNA3
BSG
LYPLA1
CABIN1
MELK
ZBTB14
ZNF217
IFT140
CRAMP1
CCDC88A
SLC25A11
RNF167
AUTS2
PEAK1
HMG20A
USP28
GAB2
EIF4H
MRFAP1
GNB1
PKNOX1
RYK
CTBP1
STAT5B
LIFR
PTBP3
MLLT10
NUDT3
PARD6B
SMURF1
CBX6
C3orf70
FEZ1
NEK6
MAST2
ATOH7
ARPC2
SPRTN
EXOC8
DNPEP
PWP2
LOC102724159
ANKZF1
NF2
PTP4A3
RABEP1
SNX19
SLC6A6
APBB1
AMMECR1
AVEN
TMEM266
RBKS
BABAM2
BTBD3
SRSF6
EXOC6
HHAT
AMOTL1
TENT2
PRMT3