[Credits]

Life Science Database Archive
Budding yeast cDNA sequencing project

5'-end sequences of budding yeast full-length cDNA clones and quality scores

Data detail

info Data name 5'-end sequences of budding yeast full-length cDNA clones and quality scores
info DOI 
info Description of data contents 

5'-end sequences of full-length cDNA clones generated from the budding yeast full-length cDNA library by the vector-capping method, the sequence quality score generated by the Phred software, and links to SGD, dbEST and UCSC Genome Browser are provided. Links to the SGD are found only in the cDNAs mapped to the genome. Links to dbEST and UCSC Genome Browser are found only in the cDNAs possessing genuine 5'-end. The number of links to SGD is 51,027, the number of links to dbEST and UCSC Genome Browser is 31,847, and the total number of cDNAs is 83,707. The data are given in a CSV format text file.

info Data file 
File name:
yeast_seq_qual.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/yeast_cdna/LATEST/yeast_seq_qual.zip
File size:
59.9MB
info Simple search URL 
info Data acquisition method 

-

info Data analysis method 

Sequencing, Base call by Phred

info Number of data entries 

83,706 entries

Data itemDescription
Clone ID Clone ID, and name in the SGD.
Link to SGD Link to SGD (Saccharomyces Genome Database, http://www.yeastgenome.org/) based on the clone ID of the cDNAs mapped to the genome. The link is found in the TogoDB edition, and only Clone ID is found in the archive file.
Link to dbEST Link to NCBI's dbEST based on accession of the GenBank for the cDNAs possessing genuine 5'-end. The link is found in the TogoDB edition, and the archive file has accession only.
Link to UCSC Genome Browser Link to the UCSC Genome Browser based on accession of the GenBank for the cDNAs possessing genuine 5'-end. The link is found in the TogoDB edition, and the archive file has accession only.
Sequence 5'-end sequence data of budding yeast full-length cDNA clones. FASTA format.
Quality Phred's quality score