Database Description

General information of database
Database name	SPD
Alternative name	Soybean Proteome Database
DOI	10.18908/lsdba.nbdc00238-000
Creator	Creator Name Setsuko Komatsu* Creator Affiliation The Institute of Crop Science, NARO(when creating) Literature Search Creator Name Katsumi Sakata Creator Affiliation Maebashi Institute of Technology Literature Search
Contact address	Department of Environmental and Food Science, Fukui University of Technology Prof. Setsuko Komatsu E-mail:
Database classification	Proteomics Resources Plant databases - Other plants
Organism	Taxonomy Name Arabidopsis thaliana Taxonomy ID 3702 Taxonomy Name Glycine max Taxonomy ID 3847
Database description	Soybean Proteome Database stores soybean protein data obtained from gel-based and gel-free proteomic techniques. The goal of this database is to provide proteomic information for functional analyses. The majority of the data is focused on soybean, which is an important crop to supply vegetable oil and protein but has high sensitivity in abiotic stresses. It was originally constructed using soybean protein data separated by two-dimensional polyacrylamide gel electrophoresis (2D-PAGE, gel-based proteomics database). In 2015, data of mass spectrometry-based label-free quantitative proteomics (gel-free proteomics database) was added. Furthermore, the database integrates multiple omics. The whole database is coordinated based on a scheme of differential omics to identify time-variant proteins under flooding stress.
Features and manner of utilization of database
License	CC BY-SA Detail
Background and funding	Name Virtual Lab System - Tsukuba Center for Cooperative Research / Agriculture,Forestry and Fisheries Research Council Name Grants-in-Aid for Scientific Research, JP15H04445 Name Grant - National Agriculture and Food Research Organization
Reference(s)	Article title A data resource for plant differential omics. Author name(s) Sakata K, Ohyanagi H, Nobori H, Nakamura T, Hashiguchi A, Nanjo Y, Mikami Y, Yunokawa H, Komatsu S Journal J Proteome Res, 8:3539-3548.
Original website information
Database maintenance site	National Agriculture and Food Research Organization (NARO)
URL of the original website	http://proteome.dc.affrc.go.jp/Soybean/
Operation start date	2008/3/5
Last update date	2015/10/5
URL of the portal site	-
Whole data download	-
Referenced database	-
Entry list	Not available
Query search	Not available
Web services	Not available
URL of Web services	-
Need for user registration	Not available