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Life Science Database Archive
SAHG

Alignment

Data detail

info Data name Alignment
info DOI 
info Description of data contents 

Alignment between target and template sequences

info Data file 
File name:
sahg_alignment.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/sahg/LATEST/sahg_alignment.zip
File size:
12.0 MB
info Simple search URL 
info Data acquisition method 

3D structures was predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493).

info Data analysis method 

-

info Number of data entries 

46,664 entries

Data itemDescription
RefSeqID RefSeq ID
Domain_type Type of domain structure (apo or holo)
Template Template protein name
Query_from Starting amino acid residue number of the aligned region of the target protein.
Query_to Ending amino acid residue number of the aligned region of the target protein.
Query_alignment Alignment sequence (query)
Template_from Starting amino acid residue number of the aligned region of the template protein.
Template_to Ending amino acid residue number of the aligned region of the template protein.
Template_alignment Alignment sequence (template)
Alignment_line Line of alignment
Identity(%) Sequence identity