About This Database

Genes (including RNA editing information)

Data description

Data name

DOI

10.18908/lsdba.nbdc00193-003

Description of data contents

List of genes in the rice mitochondrial genome including information on ORF (open reading frames), transcription and RNA editing.

Data file

File name :

rmg_gene.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/rmg/LATEST/rmg_gene.zip

File size :

3 KB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/rmg_gene#en

Data acquisition method

"Entire Sequence" data in this database

Data analysis method

Gene prediction using the tRNAscan-SE, and BLASTN, BLASTX homology search were performed against publicly available DNA databases. The REPuter program was used in the analysis of repetitive sequences.

Number of data entries

81 entries

Data detail

Data item	Description
Gene	Gene. Gene names ccmC, ccmFn, ccmFc and ccmB were proposed by Faivre-Nitschke et al. (2001).
Comment	Comment
Transcription	Transcription nt: not testedT: transcribedN: not transcribed
Editing site	Editing site N: not transcribed
Previous reports on editing sites	Previous reports on editing sites
Strand	Strand S: senseA: antisense
exon1 start	Start position of exon1
exon1 end	End position of exon1
exon2 start	Start position of exon2
exon2 end	End position of exon2
exon3 start	Start position of exon3
exon3 end	End position of exon3
exon4 start	Start position of exon4
exon4 end	End position of exon4
exon5 start	Start position of exon5
exon5 end	End position of exon5