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Life Science Database Archive
RGP gmap

Statistics of DNA Markers

Data detail

info Data name Statistics of DNA Markers
info DOI 
info Description of data contents 

Statistics of DNA markers that were used to create the rice genetic map.

info Data file 
File name:
rgp_gmap_main.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/rgp-gmap/LATEST/rgp_gmap_main.zip
File size:
1 KB
info Simple search URL 
info Data acquisition method 

Numeric data calculated during construction of a genetic linkage map.

info Data analysis method 

Number of clones of each type of marker were counted.
Segregation patterns in 186 F2 plants were detected by DNA hybridization signals on X-ray film for RFLP or by electrophoresis for RAPD markers and analyzed with MAPMAKER/EXP 3.0.
The error detection was performed with MAPMAKER/EXP 3.0 using the errot detection-on mode. All the candidate errors were reinspected in genotype segregation with further Southern hybridization analysis. Most of the residual candidate errors came from the array of genotypes of hetero-homo-hetero, with false counting of errors (w-cross overs). Therefore, the map distance was calculated by error detection-off mode.

info Number of data entries 

13 entries

Data itemDescription
Chrom. No. Number of chromosome (In Simple search site, the chromosome number link to the site of "Detailed information of DNA markers", and the image file name link to the map image.)
No. of callus cDNA clones Number of callus cDNA clones
No. of root cDNA clones

Number of root cDNA clones
No. of random genomic clones

Number of random genomic clones
No. of NotI-linking clones

Number of NotI-linking clones
No. of YAC end clones

Number of YAC end clones
No. of telomere-associated clones

Number of telomere-associated clones
No. of RAPD markers

Number of RAPD markers
No. of STS markers

Number of STS markers
No. of wheat clones

Number of wheat clones
No. of other clones

Number of other clones
Total marker number

Total marker number
Total length in error detection off mode

Total length in Kosambi map function by error detection off mode of MAPMAKER/EXP
Total length in error detection on mode

Total length in Kosambi map function by error detection on mode of MAPMAKER/EXP
Difference between error detection on and off mode (cM)

Difference between error detection on and off mode (cM)
Difference between error detection on and off mode (%)

Difference between error detection on and off mode (%)
No. of candidate errors by MAPMAKER/EXP

Number of the candidate errors shown by MAPMAKER/EXP 3.0
Total number of observed genotypes

The total number of the observed genotypes to calculate the map
Average number of observed genotypes per marker An avarege of the number of the observed genotypes per marker