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Data description
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Data name
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Statistics of DNA Markers
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DOI
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10.18908/lsdba.nbdc00318-01-001
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Description of data contents
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Statistics of DNA markers that were used to create the rice genetic map.
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Data file
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File name :
rgp_gmap_main.zip
File URL :
File size :
1 KB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/rgp_gmap_main#en
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Data acquisition method
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Numeric data calculated during construction of a genetic linkage map.
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Data analysis method
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Number of clones of each type of marker were counted.
Segregation patterns in 186 F2 plants were detected by DNA hybridization signals on X-ray film for RFLP or by electrophoresis for RAPD markers and analyzed with MAPMAKER/EXP 3.0.
The error detection was performed with MAPMAKER/EXP 3.0 using the errot detection-on mode. All the candidate errors were reinspected in genotype segregation with further Southern hybridization analysis. Most of the residual candidate errors came from the array of genotypes of hetero-homo-hetero, with false counting of errors (w-cross overs). Therefore, the map distance was calculated by error detection-off mode.
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Number of data entries
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13 entries
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Data detail
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Data item
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Description
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| Chrom. No. |
Number of chromosome (In Simple search site, the chromosome number link to the site of "Detailed information of DNA markers", and the image file name link to the map image.) |
| No. of callus cDNA clones |
Number of callus cDNA clones |
| No. of root cDNA clones |
Number of root cDNA clones |
| No. of random genomic clones |
Number of random genomic clones |
| No. of NotI-linking clones |
Number of NotI-linking clones |
| No. of YAC end clones |
Number of YAC end clones |
| No. of telomere-associated clones |
Number of telomere-associated clones |
| No. of RAPD markers |
Number of RAPD markers |
| No. of STS markers |
Number of STS markers |
| No. of wheat clones |
Number of wheat clones |
| No. of other clones |
Number of other clones |
| Total marker number |
Total marker number |
| Total length in error detection off mode |
Total length in Kosambi map function by error detection off mode of MAPMAKER/EXP |
| Total length in error detection on mode |
Total length in Kosambi map function by error detection on mode of MAPMAKER/EXP |
| Difference between error detection on and off mode (cM) |
Difference between error detection on and off mode (cM) |
| Difference between error detection on and off mode (%) |
Difference between error detection on and off mode (%) |
| No. of candidate errors by MAPMAKER/EXP |
Number of the candidate errors shown by MAPMAKER/EXP 3.0 |
| Total number of observed genotypes |
The total number of the observed genotypes to calculate the map |
| Average number of observed genotypes per marker |
An avarege of the number of the observed genotypes per marker |
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