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Life Science Database Archive
RED

Expression data

Data detail

info Data name Expression data
info DOI 
info Description of data contents 

Normalized expression data derived from experiments.

 

info Data file 
File name:
red_expression.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/red/LATEST/red_expression.zip
File size:
85.5 MB
info Simple search URL 
info Data acquisition method 

This table contains normalized expression data derived from experiments using various RNAs hybridized to the Rice 9000 cDNA Array (>600 experiments in 25 physiological categories). Experiments were performed by the Rice Microarray Project and other research groups.

 

info Data analysis method 

The data were normalized by data processing, including PRIM (processing implementation for microarray) filtering, and ‘sector median’ normalization, performed at each spotting sector on the glass slide to remove uneven sectors. All the expression data are shown as values of the expression ratio.

 

info Number of data entries 

7,151,065 entries

 

Data itemDescription
Experimental ID String connected by a '_' between "Research ID", "Round", "C", "Group no" of "Control no" data, "Intra no" of "Control no" data, "T", "Group no" of "Target no" data, and "Intra no" of "Target no" data.
Research ID Research ID (Subject number)
Round Round
Control no Control data, correspondence to column of "Sample no" on the red_sample table.
Target no Target data, correspondence to column of "Sample no" on the red_sample table.
Element No(Glass) Element number (spotted position on the glass)
EST name EST name, correspondence to column of "Clone name" on the red_est.
Expression value Expression value (normalized ratio average)