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Life Science Database Archive
Q-TARO

QTL Information Table

Data detail

info Data name QTL Information Table
info DOI 
info Description of data contents 

1051 QTLs extracted from 463 reports are recorded as representative QTLs (As of March 31, 2008).

info Data file 
File name:
qtaro_sjis.zip (Shift JIS)
File URL:
https://dbarchive.biosciencedbc.jp/data/qtaro/LATEST/qtaro_sjis.zip
File size:
89 KB
File name:
qtaro_utf8.zip (UTF-8)
File URL:
https://dbarchive.biosciencedbc.jp/data/qtaro/LATEST/qtaro_utf8.zip
File size:
89 KB
info Simple search URL 
info Data acquisition method 

5096 QTLs were extracted from 1214 reports previously published.
Reference sources:
- PubMed (http://www.ncbi.nlm.nih.gov/sites/entrez)
- HighWire (http://highwire.stanford.edu/)
- Jstage (http://www.jstage.jst.go.jp/browse/-char/ja)
- the Rice Genetics Newsletter (http://www.gramene.org/newsletters/rice_genetics/).

info Data analysis method 

The positions of these QTLs were estimated from the physical positions of either two flanking markers (the genomic positions of the distal ends of the two markers) or a co-segregated single marker (between the start and end positions on the genome). By screening for redundancy of traits at the same physical positions, representative QTLs were selected.

info Number of data entries 

1,051 entries

Data itemDescription
id ID number of QTL
QTL/Gene Name of QTL
Major category Major category of quantitative character
Category of object character Category of object character
Character Character
Marker Type of marker
No. of marker for position determination Number of the markers used for position determination
Chr Chromosome number
Genome start QTL start position on the genome
Genome end QTL end position on the genome
Mapping method Mapping method
Population Population of plants
No. of plants Number of plants
LOD LOD score
Parent A Parent A
Parent B Parent B
Direction (Parent) Direction (Parent)
a) Physical Marker of physical mapping
b) Fine1; interval Flanking marker of fine mapping A
b) Fine2; interval Flanking marker of fine mapping B
b) Fine3; co-segregated Co-segregated marker of fine mapping
c) Interval1; interval Flanking marker of interval mapping A
c) Interval2; interval Flanking marker of interval mapping B
c) Interval3; co-segregated Co-segregated marker of interval mapping
d) Co-segregated Co-segregated marker
Explained variance Explained variance
Additive effect Additive effect
Year Year the reference was published
Reference source Search method of the reference.
Journals were searched within the following websites.
- Jsa (Jstage)
- Pha (PubMed, HighWire)
- RGN (Rice Genetics Newsletter)
Reference no. Number assigned to the reference serially within each reference source
Reference Reference
Reference location URL of the reference