About This Database

Raw Data (ASCII format)

Data description

Data name

DOI

10.18908/lsdba.nbdc00168-003

Description of data contents

The document in EMBL-like format that contains brief descriptions of individual cis-elements.

Data file

File name :

place.seq.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/place/LATEST/place.seq.zip

File size :

110 KB

Simple search URL

Data acquisition method

The nucleotide sequence motifs for the regulatory region of gene expression were surveyed from published papers. In addition, supplementary descriptions, references, and the accession numbers in sequence databases are provided.

Data analysis method

Number of data entries

469 entries

Data detail

Data item	Description
ID	Identifier
AC	Accession number
DT	Date (operation) author
DE	Description (regulation, gene, transacting factor, etc.)
KW	Keywords
OS	Species
RA	Authors
RT	Title
RL	Literature data
RC	Criteria (DNase I footprinting study / Chemical modifications / Gel retardation assay / homology / other)
RD	External Database (MEDLINE number or DDBJ/EMBL/GenBank accession number)
SQ	Sequence of the cis-acting regulatory DNA element. For the cis-acting elements the following symbols were used as codes representing A, G, C or T. B: C, G or TD: A, G or TH: A, C or TK: G or TM: A or CN: A, C, G or TR: A or GS: C or GV: A, C or GW: A or TY: C or T (Mar. 31, 1997)
XX	Data item delimiter