[Credits]

Life Science Database Archive
PLACE

Raw Data (ASCII format)

Data detail

info Data name Raw Data (ASCII format)
info DOI 
info Description of data contents 

The document in EMBL-like format that contains brief descriptions of individual cis-elements.

info Data file 
File name:
place.seq.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/place/LATEST/place.seq.zip
File size:
110 KB
info Simple search URL -
info Data acquisition method 

The nucleotide sequence motifs for the regulatory region of gene expression were surveyed from published papers. In addition, supplementary descriptions, references, and the accession numbers in sequence databases are provided.

info Data analysis method -
info Number of data entries 

469 entries

Data itemDescription
ID Identifier
AC Accession number
DT Date (operation) author
DE Description (regulation, gene, transacting factor, etc.)
KW Keywords
OS Species
RA Authors
RT Title
RL Literature data
RC Criteria (DNase I footprinting study / Chemical modifications / Gel retardation assay / homology / other)
RD External Database (MEDLINE number or DDBJ/EMBL/GenBank accession number)
SQ Sequence of the cis-acting regulatory DNA element.

For the cis-acting elements the following symbols were used as codes representing A, G, C or T.

B: C, G or T
D: A, G or T
H: A, C or T
K: G or T
M: A or C
N: A, C, G or T
R: A or G
S: C or G
V: A, C or G
W: A or T
Y: C or T

(Mar. 31, 1997)
XX Data item delimiter