About This Database

Registered plant list

Data description

Data name

DOI

10.18908/lsdba.nbdc01194-01-001.V003

Description of data contents

The list of organisms handled in this database. It includes that basic explanation of the organism, links to the DNA marker list, the QTL list, the list of related databases and/or the genomic analysis information.

Data file

File name :

pgdbj_dna_marker_linkage_map_plant_species_list_en.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/pgdbj-dna-marker-linkage-map/LATEST/pgdbj_dna_marker_linkage_map_plant_species_list_en.zip

File size :

30.1 KB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/pgdbj_dna_marker_linkage_map_plant_species_list_en

Data acquisition method

The information related to each organism was collected from databases, papers, and/or reveiews.

Data analysis method

Number of data entries

80 entries

Data detail

Data item	Description
Scientific name	Scientific name
Scientific name authority	Scientific name authority
Taxonomy ID	NCBI Taxonomy ID
Phylum division	Phylum division(Japanese)
Family	Family
Genus	Genus
Species	Species
Variety	Variety
Common name	Common name
Synonym	Synonym
Links (DFCI)	Links to DFCI Gene Index
Resource info	Resource information
Reference	Reference
Sequencing method	Sequencing method
Reads count	Reads count
Assembly method	Assembly method
Sequencing depth	Sequencing depth
Gene annotation method	Gene annotation method
Contig count	Contig count
Scaffold count	Scaffold count
Gene count	Gene count
Chromosome count	Chromosome count
Covered region	Covered region
Genome size	Genome size
ORF count	ORF count
GC content	GC content
Contact	Contact
Country	Country
Links (GOLD)	Links to JGI GOLD
Links (NCBI Genome)	Links to NCBI Genome
Description	Description
Links (Marker list)	Presence or absence of Marker list in this DB (link to the Marker list in simple search page)
Links (QTL list)	Presence or absence of QTL list in this DB (link to the QTL list in simple search page)
Links (KNApSAcK Core)	Presence or absence of KNApSAcK Core in this DB (link to the KNApSAcK Core site in simple search page)
Links (Skewered KNApSAcK)	Presence or absence of Skewered KNApSAcK in this DB (link to the Skewered KNApSAcK site in simple search page)
Links (Mass Base)	Presence or absence of Mass Base in this DB (link to the Mass Base site in simple search page)