[Credits]

Life Science Database Archive
KOME

Mapping data detail

Data detail

info Data name Mapping data detail
info DOI 
info Description of data contents 

Detailed mapping information with the japonica rice genome sequences from the International Rice Genome Sequencing Project (IRGSP)

info Data file 
File name:
kome_mapping_data_detail.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_mapping_data_detail.zip
File size:
2.3 MB
info Simple search URL 
info Data acquisition method -
info Data analysis method 

Mapped the full-length cDNA clones to the japonica rice genome BAC contigs.

info Number of data entries 

154,484 entries

Data itemDescription
ACCESSION_NO Accession number of the full-length cDNA clone
CLONE_NAME Name of the full-length cDNA clone
BAC_ACCESSION_NO Accession number of the mapped BAC contigs
CHROMOSOME Chromosome number of the mapped BAC contigs
BAC_START_POS Exon start position on the mapped BAC contigs
BAC_END_POS Exon end position on the mapped BAC contigs
CDNA_START_POS Exon start position on the mapped cDNA clone
CDNA_END_POS Exon end position on the mapped cDNA clone
STRAND Strand direction of the mapped cDNA clone
TU_ID ID of the mapped TU (Transcriptional Unit)