About This Database

Mapping data

Data description

Data name

Mapping data

DOI

Description of data contents

Mapping information with the japonica rice genome sequences obtained from the International Rice Genome Sequencing Project (IRGSP)

Data file

File name :

kome_mapping_data.zip

File URL :

File size :

723 KB

Simple search URL

Data acquisition method

Data analysis method

Mapped the full-length cDNA clones to the japonica rice genome BAC contigs.

Number of data entries

30,643 entries

Data detail

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
BAC_ACCESSION_NO	Accession number of the mapped BAC contigs
CHROMOSOME	Chromosome number of the mapped BAC contigs
BAC_START_POS	Alignment start position on the mapped BAC contigs
BAC_END_POS	Alignment end position on the mapped BAC contigs
CDNA_START_POS	Alignment start position on the mapped cDNA clone
CDNA_END_POS	Alignment end position on the mapped cDNA clone
STRAND	Strand direction of the mapped cDNA clone
TU_ID	ID of the mapped TU (Transcriptional Unit)