About This Database

InterPro search result

Data description

Data name

DOI

10.18908/lsdba.nbdc00120-021

Description of data contents

Results of motif searches against the InterPro database

Data file

File name :

kome_interpro_search_result.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_interpro_search_result.zip

File size :

2.1 MB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/kome_interpro_search_result#en

Data acquisition method

InterPro release 8.0 was used for the searches.

Data analysis method

Performed motif searches against the InterPro database.
The following 9 programs were used to find motifs.
BlastProDom
FPrintScan
HMMPfam
HMMPIR
HMMSmart
HMMTigr
ProfileScan
ScanRegExp
SuperFamily

Number of data entries

110,589 entries

Data detail

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
INTERPRO_ID	ID of the motif in the InterPro database
INTERPRO_NAME	Name of the motif in the InterPro database
METHOD	Motif search program
ACCESSION_ID	Accession number of the motif
SHORT_NAME	Short name of the motif
LOCATION	Location of the motif
EXPECT	Expect value in the search result