About This Database

Basical information

Data description

Data name

Basical information

DOI

Description of data contents

Basic Information about full-length cDNA clones

Data file

File name :

kome_basical_information.zip

File URL :

File size :

607 KB

Simple search URL

Data acquisition method

The full-length cDNA clones were sequenced by RIKEN and FAIS.

Data analysis method

After an all-against-all Blastn search, clones with Expect values less than 1e-180 were grouped into the same cluster.

Number of data entries

37,132 entries

Data detail

Data item	Description
ACCESSION_NO	DDBJ accession number of the full-length cDNA clone. All the clones in the database were registered in DDBJ.
CLONE_ID	ID number assigned to each full-length cDNA clone
BELONG	Initial of the research institute where the clone was sequenced. (R: RIKEN, F: FAIS)
CLONE_NAME	Name of the full-length cDNA clone
CLUSTER_ID	Cluster ID of the full-length cDNA clone.Cluster IDs were numbered serially.
LENGTH	Length of the full-length cDNA sequence
POLYA_CUT_LENGTH	Length of the full-length cDNA sequence excluding the poly(A) region
SEQ_QUALITY	Ratio of non-N residues contained in the full-length cDNA sequence
POLYA_CUT_SEQ_QUALITY	Ratio of non-N residues contained in the full-length cDNA sequence excluding the poly(A) region
SEQ_ACCURACY	Sequence accuracy calculated as the average of accuracies of individual bases after a sequencing run.
LIBRARY	Information about the full-length cDNA library, such as tissues which the library derived from and their treatment conditions.