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Life Science Database Archive
KOME

Basical information

Data detail

info Data name Basical information
info DOI 
info Description of data contents 

Basic Information about full-length cDNA clones

info Data file 
File name:
kome_basical_information.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_basical_information.zip
File size:
607 KB
info Simple search URL 
info Data acquisition method 

The full-length cDNA clones were sequenced by RIKEN and FAIS.

info Data analysis method 

After an all-against-all Blastn search, clones with Expect values less than 1e-180 were grouped into the same cluster.

info Number of data entries 

37,132 entries

Data itemDescription
ACCESSION_NO DDBJ accession number of the full-length cDNA clone. All the clones in the database were registered in DDBJ.
CLONE_ID ID number assigned to each full-length cDNA clone
BELONG Initial of the research institute where the clone was sequenced. (R: RIKEN, F: FAIS)
CLONE_NAME Name of the full-length cDNA clone
CLUSTER_ID Cluster ID of the full-length cDNA clone.
Cluster IDs were numbered serially.
LENGTH Length of the full-length cDNA sequence
POLYA_CUT_LENGTH Length of the full-length cDNA sequence excluding the poly(A) region
SEQ_QUALITY Ratio of non-N residues contained in the full-length cDNA sequence
POLYA_CUT_SEQ_QUALITY Ratio of non-N residues contained in the full-length cDNA sequence excluding the poly(A) region
SEQ_ACCURACY Sequence accuracy calculated as the average of accuracies of individual bases after a sequencing run.
LIBRARY Information about the full-length cDNA library, such as tissues which the library derived from and their treatment conditions.