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About This Database

Arabidopsis CDS blastp result

Data description
Data name
Arabidopsis CDS blastp result
DOI
10.18908/lsdba.nbdc00120-017
Description of data contents
Results of blastp searches against Arabidopsis thaliana CDSs
Data file
File name :
kome_arabidopsis_cds_blastp_result.zip
File URL :
File size :
3.6 MB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_arabidopsis_cds_blastp_result#en
Data acquisition method

Predicted CDSs of Arabidopsis thaliana used for the searches were obtained from the TIGR Arabidopsis thaliana Database ver. 5.

Data analysis method

Performed blastp searches with the full-length cDNA sequences against predicted CDSs of Arabidopsis thaliana.
The results are filtered with Expect values lower than 1e-10.

Number of data entries

137,642 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

MIPS_CODE

MIPS code in the Arabidopsis thaliana database

DEFINITION

Definition of CDS in the Arabidopsis thaliana database

EXPECT

Expect value in the blastp search result

SCORE

Score in the blastp search result