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Life Science Database Archive
KOME

PLACE search result

Data detail

info Data name PLACE search result
info DOI 
info Description of data contents 

Results of signal search against PLACE.
PLACE: cis-acting regulatory DNA elements Database

info Data file 
File name:
kome_place_search_result.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_place_search_result.zip
File size:
43 MB
info Simple search URL 
info Data acquisition method 

The full-length cDNA clones were mapped to japonica rice genome sequences.
The cis-acting regulatory DNA elements were obtained from PLACE 22.0.

info Data analysis method 

After mapping the cDNA clones to the japonica rice genome sequences, Cis-element analysis were performed against 1000-bp upstream regions of the site where the full-length cDNA clones were mapped.

info Number of data entries 

5,158,379 entries

Data itemDescription
ACCESSION_NO Accession number of the full-length cDNA clone
CLONE_NAME Name of the full-length cDNA clone
HIT_NO Ranking in the sigscan search result
SIGNAL_NAME Name of the signal element
SIGNAL_TYPE Signal type
LOCATION Signal position
STRAND Strand direction of the query cDNA sequence
SIGNAL_SEQ Signal sequence
SIGNAL_ID Signal element ID in PLACE