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About This Database

PLACE search result

Data description
Data name
PLACE search result
DOI
10.18908/lsdba.nbdc00120-015
Description of data contents
Results of signal search against PLACE. PLACE: cis-acting regulatory DNA elements Database
Data file
File name :
kome_place_search_result.zip
File URL :
File size :
43 MB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_place_search_result#en
Data acquisition method

The full-length cDNA clones were mapped to japonica rice genome sequences.
The cis-acting regulatory DNA elements were obtained from PLACE 22.0.

Data analysis method

After mapping the cDNA clones to the japonica rice genome sequences, Cis-element analysis were performed against 1000-bp upstream regions of the site where the full-length cDNA clones were mapped.

Number of data entries

5,158,379 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

HIT_NO

Ranking in the sigscan search result

SIGNAL_NAME

Name of the signal element

SIGNAL_TYPE

Signal type

LOCATION

Signal position

STRAND

Strand direction of the query cDNA sequence

SIGNAL_SEQ

Signal sequence

SIGNAL_ID

Signal element ID in PLACE