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Life Science Database Archive
KOME

Tos17 link result

Data detail

info Data name Tos17 link result
info DOI 
info Description of data contents 

Relation with Tos17 mutant clones

info Data file 
File name:
kome_tos17_link_result.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_tos17_link_result.zip
File size:
49 KB
info Simple search URL 
info Data acquisition method 

The flanking sequences of Tos17-induced insertion mutants obtained from the Rice Tos17 Insertion Mutant Database were used.

info Data analysis method 

We predicted that there would be relations between the overlapped regions that emerge by mapping both the Tos17 flanking seqeunces and the full-length cDNA clones to the rice genome BAC contigs.
The blastn searches were performed with threshold Expect value of less than 1e-100 for the mapping.

info Number of data entries 

2,864 entries

Data itemDescription
ACCESSION_NO Accession number of the full-length cDNA clone
FULL_CLONE_NAME Name of the full-length cDNA clone
TOS_NAME Name of the Tos17 clone
BAC_ACCESSION_NO Accession number of the mapped BAC clone
TOS_INSERT_POSITION Insert position of the Tos17 clone on the BAC contigs
cDNA_START_POSITION Mapping start position of the cDNA clone on the BAC contigs
cDNA_END_POSITION Mapping end position of the cDNA clone on the BAC contigs