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About This Database

Tos17 link result

Data description
Data name
Tos17 link result
DOI
10.18908/lsdba.nbdc00120-014
Description of data contents
Relation with Tos17 mutant clones
Data file
File name :
kome_tos17_link_result.zip
File URL :
File size :
49 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_tos17_link_result#en
Data acquisition method

The flanking sequences of Tos17-induced insertion mutants obtained from the Rice Tos17 Insertion Mutant Database were used.

Data analysis method

We predicted that there would be relations between the overlapped regions that emerge by mapping both the Tos17 flanking seqeunces and the full-length cDNA clones to the rice genome BAC contigs.
The blastn searches were performed with threshold Expect value of less than 1e-100 for the mapping.

Number of data entries

2,864 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

FULL_CLONE_NAME

Name of the full-length cDNA clone

TOS_NAME

Name of the Tos17 clone

BAC_ACCESSION_NO

Accession number of the mapped BAC clone

TOS_INSERT_POSITION

Insert position of the Tos17 clone on the BAC contigs

cDNA_START_POSITION

Mapping start position of the cDNA clone on the BAC contigs

cDNA_END_POSITION

Mapping end position of the cDNA clone on the BAC contigs