[ Japanese | English ]
About This Database

RMOS blastn result

Data description
Data name
RMOS blastn result
DOI
10.18908/lsdba.nbdc00120-013
Description of data contents
Results of blastn searches against the Rice EST Microarray (G-Array)
Data file
File name :
kome_rmos_blastn_result.zip
File URL :
File size :
74 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_rmos_blastn_result#en
Data acquisition method

Rice genome sequences used for the searches were obtained from the Rice Microarray Opening Site (RMOS).

Data analysis method

Performed blastn (blast 2.2.12) searches against the probe sequences on the Rice EST Microarray (G-Array).
The results are filtered with Expect values lower than 1e-10.

Number of data entries

5,024 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

ARRAY_ELEMENT

Element number of the G-Array probe

PROBE_ACCESSION

Accession number of the G-Array probe

PROBE_CLONE_NAME

Clone name of the G-Array probe

EXPECT

Expect value in the blastn search result

SCORE

Score in the blastn search result