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About This Database

Indica genome blast search result

Data description
Data name
Indica genome blast search result
DOI
10.18908/lsdba.nbdc00120-012
Description of data contents
Results of blastn searches against indica genome sequences (top hits only)
Data file
File name :
kome_indica_genome_blast_search_result.zip
File URL :
File size :
338 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_indica_genome_blast_search_result#en
Data acquisition method

Genome sequences of indica rice used for the searches were obtained from the BGI-RIS.

Data analysis method

Performed blastn (blast 2.2.12) searches against the indica rice genome sequences.
The results are filtered with Expect values lower than 1e-10.

Number of data entries

35,736 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

INDICA_ACCESSION

Accession number of the GenBank entry

DEFINITION

Definition in the GenBank entry

EXPECT

Expect value in the blastn search result

SCORE

Score in the blastn search result

STRAND

Strand direction of the cDNA clone