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Life Science Database Archive
Silkworm, Bombyx mori, reference transcriptome data

Expression data of each transcript in mutiple tissue

Data detail

info Data name Expression data of each transcript in mutiple tissue
info DOI 
info Version 
V1-
info Description of data contents 

This data file contains values of expressions (tpm value) in multiple tissues of Bombyx mori per each transcript.

info Data file 
File name:
kaiko_transcript_tpm_data.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kaiko/LATEST/kaiko_transcript_tpm_data.zip
File size:
5.8 MB
info Simple search URL 
info Data acquisition method 

Reference transcriptomic data and raw RNAseq data constructed with the method described in "Metadata of reference transcriptomic data"
Other RNAseq data was downloaded from Sequence Read Archive(SRA): DRA005094, DRA005878, DRA005094.

info Data analysis method 

Using the above data, estimation of tpm values of each transcript was performed by Kallisto ver0.44.0.

info Number of data entries 

51,926 entries

Data itemDescription
ASG1 Anterior silk gland (biological replicate 1)
ASG2 Anterior silk gland (biological replicate 2)
ASG3 Anterior silk gland (biological replicate 3)
MSG_A1 Anterior part of the middle silk gland (biological replicate 1)
MSG_A2 Anterior part of the middle silk gland (biological replicate 2)
MSG_A3 Anterior part of the middle silk gland (biological replicate 3)
MSG_M1 Middle part of the middle silk gland (biological replicate 1)
MSG_M2 Middle part of the middle silk gland (biological replicate 2)
MSG_M3 Middle part of the middle silk gland (biological replicate 3)
MSG_P1 Posterior part of the middle silk gland (biological replicate 1)
MSG_P2 Posterior part of the middle silk gland (biological replicate 2)
MSG_P3 Posterior part of the middle silk gland (biological replicate 3)
PSG1 Posterior silk gland (biological replicate 1)
PSG2 Posterior silk gland (biological replicate 2)
PSG3 Posterior silk gland (biological replicate 3)
MG1 Midgut (biological replicate 1)
MG2 Midgut (biological replicate 2)
MG3 Midgut (biological replicate 3)
FB1 Fat body (biological replicate 1)
FB2 Fat body (biological replicate 2)
FB3 Fat body (biological replicate 3)
MT1 Malpighian tubules (biological replicate 1)
MT2 Malpighian tubules (biological replicate 2)
MT3 Malpighian tubules (biological replicate 3)
TT1 Testis (biological replicate 1)
TT2 Testis (biological replicate 2)
TT3 Testis (biological replicate 3)
OV1 Ovary (biological replicate 1)
OV2 Ovary (biological replicate 2)
OV3 Ovary (biological replicate 3)
BN_FB1 Fat body from SRA (biological replicate 1)
BN_FB2 Fat body from SRA (biological replicate 2)
BN_FB3 Fat body from SRA (biological replicate 3)
BN_MG1 Midgut from SRA (biological replicate 1)
BN_MG2 Midgut from SRA (biological replicate 2)
BN_MG3 Midgut from SRA (biological replicate 3)
BN_MT1 Malpighian tubules from SRA (biological replicate 1)
BN_MT2 Malpighian tubules from SRA (biological replicate 2)
BN_MT3 Malpighian tubules from SRA (biological replicate 3)
BN_SG1 Silk gland from SRA (biological replicate 1)
BN_SG2 Silk gland from SRA (biological replicate 2)
BN_SG3 Silk gland from SRA (biological replicate 3)
BN_TT1 Testis from SRA (biological replicate 1)
BN_TT2 Testis from SRA (biological replicate 2)
BN_TT3 Testis from SRA (biological replicate 3)
target_id Unique ID allocated to each transcript in reference transcriptomic data