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Table of Cluster and Organism Species Number

Data description
Data name
Table of Cluster and Organism Species Number
DOI
10.18908/lsdba.nbdc00464-010
Description of data contents
Cluster, representative sequence ID of cluster, its length, the number of sequences contained in the cluster, organism species, the number of sequences belonging to the cluster for each of 95 organism species, compiled into a tab-delimited text file format table.
Data file
File name :
all95.tbl.zip
File URL :
File size :
4.53MB
Simple search URL
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Data acquisition method

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Data analysis method

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Number of data entries

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Data detail
Data item Description
Number

Cluster ID

ID

Sequence ID

Length

Sequence length

seqs

Number of sequences belonging to cluster

homologs

Number of sequences belonging to cluster

ATH

Number of sequences belonging to cluster in the Arabidopsis thaliana sequence

OSA

Number of sequences belonging to cluster in the Oryza sativa sequence

PoTR

Number of sequences belonging to cluster in the Populus tricocarpa sequence

PPT

Number of sequences belonging to cluster in the Physcomitrella patens sequence

CRE

Number of sequences belonging to cluster in the Chlamydomonas reinhardtii sequence

OTAU

Number of sequences belonging to cluster in the Ostreococcus tauri sequence

CME

Number of sequences belonging to cluster in the Cyanidioschyzon merolae sequence

GTH

Number of sequences belonging to cluster in the Guillardia theta sequence

PFA

Number of sequences belonging to cluster in the Plasmodium falciparum sequence

PTR

Number of sequences belonging to cluster in the Phaeodactylum tricornutum sequence

TPS

Number of sequences belonging to cluster in the Thalassiosira pseudonana sequence

Ter

Number of sequences belonging to cluster in the Trichodesmium erythraeum 405 1 sequence

Ana

Number of sequences belonging to cluster in the Anabaena sp. PCC 7120 sequence

Ava

Number of sequences belonging to cluster in the Anabaena variabilis ATCC 29413 sequence

Npun

Number of sequences belonging to cluster in the Nostoc punctiforme sp. PCC73102 sequence

Syn

Number of sequences belonging to cluster in the Synechocystis sp. PCC 6803 sequence

Glv

Number of sequences belonging to cluster in the Gloeobacter violaceus sequence

Tel

Number of sequences belonging to cluster in the Thermosynechococcus elongatus sequence

YelA

Number of sequences belonging to cluster in the Cyanobacterium Yellowstone A-prime sequence

YelB

Number of sequences belonging to cluster in the Cyanobacterium Yellowstone B-prime sequence

S63

Number of sequences belonging to cluster in the Synechococcus sp. PCC 6301 sequence

S79

Number of sequences belonging to cluster in the Synechococcus sp. PCC 7942 sequence

S81

Number of sequences belonging to cluster in the Synechococcus sp. WH8102 sequence

S93

Number of sequences belonging to cluster in the Synechococcus sp. CC9311 sequence

S96

Number of sequences belonging to cluster in the Synechococcus sp. CC9605 sequence

S99

Number of sequences belonging to cluster in the Synechococcus sp. CC9902 sequence

Pm1

Number of sequences belonging to cluster in the Prochlorococcus marinus MED4 sequence

Pm2

Number of sequences belonging to cluster in the Prochlorococcus marinus MIT9313 sequence

Pm3

Number of sequences belonging to cluster in the Prochlorococcus marinus SS120 sequence

Pm4

Number of sequences belonging to cluster in the Prochlorococcus marinus MIT9312 sequence

Pm5

Number of sequences belonging to cluster in the Prochlorococcus marinus NATL2A sequence

Pm6

Number of sequences belonging to cluster in the Prochlorococcus marinus MIT9301 sequence

Pm7

Number of sequences belonging to cluster in the Prochlorococcus marinus MIT9303 sequence

Pm8

Number of sequences belonging to cluster in the Prochlorococcus marinus MIT9315 sequence

Pm9

Number of sequences belonging to cluster in the Prochlorococcus marinus NATL1A sequence

PmA

Number of sequences belonging to cluster in the Prochlorococcus marinus AS9601 sequence

Atu

Number of sequences belonging to cluster in the Agrobacterium tumefaciens str. C58 sequence

Bja

Number of sequences belonging to cluster in the Bradyrhizobium japonicum USDA 110 sequence

Bms

Number of sequences belonging to cluster in the Brucella suis 1330 sequence

Ccr

Number of sequences belonging to cluster in the Caulobacter crescentus CB15 sequence

Gox

Number of sequences belonging to cluster in the Gluconobacter_oxydans_621H sequence

Mes

Number of sequences belonging to cluster in the Mesorhizobium sp. BNC1 sequence

Mlo

Number of sequences belonging to cluster in the Mesorhizobium loti MAFF303099 sequence

Rhe

Number of sequences belonging to cluster in the Rhizobium_etli_CFN_42 sequence

Rle

Number of sequences belonging to cluster in the Rhizobium leguminosarum sequence

Sme

Number of sequences belonging to cluster in the Sinorhizobium meliloti 1021 sequence

Rpa1

Number of sequences belonging to cluster in the Rhodopseudomonas plustris BisA53 sequence

Rpa2

Number of sequences belonging to cluster in the Rhodopseudomonas plustris BisB4 sequence

Rpa3

Number of sequences belonging to cluster in the Rhodopseudomonas plustris BisB18 sequence

Rpa4

Number of sequences belonging to cluster in the Rhodopseudomonas plustris HaA2 sequence

Rpal

Number of sequences belonging to cluster in the Rhodopseudomonas plustris sequence

Rrub

Number of sequences belonging to cluster in the Rhodospirillum rubrum ATCC 11170 sequence

Rde

Number of sequences belonging to cluster in the Roseobacter denitrificans Och 114 sequence

Rsh

Number of sequences belonging to cluster in the Rhodobacter sphaeroides ATCC 17029 sequence

Rsp

Number of sequences belonging to cluster in the Rhodobacter sphaeroides 2.4.1 sequence

Eco

Number of sequences belonging to cluster in the Escherichia coli K-12 sequence

Pst

Number of sequences belonging to cluster in the Pseudomonas syringae pv. tomato str. DC3000 sequence

Vvy

Number of sequences belonging to cluster in the Vibrio vulnificus YJ016 sequence

Bsu

Number of sequences belonging to cluster in the Bacillus subtilis Marburg 168 sequence

Sep

Number of sequences belonging to cluster in the Staphylococcus epidermidis ATCC 12228 sequence

Fal

Number of sequences belonging to cluster in the Frankia alni ACN14a sequence

Fra

Number of sequences belonging to cluster in the Frankia sp. CcI3 sequence

Mtu

Number of sequences belonging to cluster in the Mycobacterium tuberculosis H37Rv sequence

Sco

Number of sequences belonging to cluster in the Streptomyces coelicolor A3(2) sequence

Rso

Number of sequences belonging to cluster in the Ralstonia solanacearum GMI1000 sequence

Cvi

Number of sequences belonging to cluster in the Chromobacterium violaceum ATCC 12472 sequence

Bma

Number of sequences belonging to cluster in the Burkholderia mallei ATCC 23344 sequence

Bpe

Number of sequences belonging to cluster in the Bordetella pertussis Tohama I sequence

Eba

Number of sequences belonging to cluster in the Azoarcus sp EbN1 sequence

Caur

Number of sequences belonging to cluster in the Chloroflexus aurantiacus sequence

Cch

Number of sequences belonging to cluster in the Chlorobium chlorochromatii CaD3 sequence

Clim

Number of sequences belonging to cluster in the Chlorobium limicola DSM 245 sequence

Cph

Number of sequences belonging to cluster in the Chlorobium phaeobacteroides DSM 266 sequence

Ctep

Number of sequences belonging to cluster in the Clorobium tepidum sequence

Pvi

Number of sequences belonging to cluster in the Prostheocochloris vibrioformis DSM 265 sequence

Afu

Number of sequences belonging to cluster in the Archaeoglobus fulgidus DSM 4304 sequence

Hal

Number of sequences belonging to cluster in the Halobacterium sp. NRC-1 sequence

Mac

Number of sequences belonging to cluster in the Methanosarcina acetivorans str. C2A sequence

Pho

Number of sequences belonging to cluster in the Pyrococcus horikoshii OT3 sequence

Ape

Number of sequences belonging to cluster in the Aeropyrum pernix K1 sequence

Sto

Number of sequences belonging to cluster in the Sulfolobus tokodaii str. 7 sequence

Neq

Number of sequences belonging to cluster in the Nanoarchaeum equitans Kin4-M sequence

SCE

Number of sequences belonging to cluster in the Saccharomyces cerevisiae sequence

SPO

Number of sequences belonging to cluster in the Schyzosaccharomyces pombe sequence

PHRA

Number of sequences belonging to cluster in the Phytophthora ramorum sequence

PHSO

Number of sequences belonging to cluster in the Phytophthora sojae sequence

DCGR

Number of sequences belonging to cluster in the Candida glabrata CBS138 sequenc

DKLA

Number of sequences belonging to cluster in the Kluyveromyces lactis NRRL Y-1140 sequence

NCR

Number of sequences belonging to cluster in the Neurospora crassa 74-OR23-1A sequence

DPTM

Number of sequences belonging to cluster in the Paramecium tetraurelia sequence

TET

Number of sequences belonging to cluster in the Tetrahymena thermophila SB210 sequence

NGR

Number of sequences belonging to cluster in the Naegleria gruberi sequence

HSA

Number of sequences belonging to cluster in the Homo sapiens sequence

DME

Number of sequences belonging to cluster in the Drosophila melanogaster sequence

CEL

Number of sequences belonging to cluster in the Caenorhabditis elegans sequence

Annotations

Annotation