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About This Database

fRNAdb Summary

Data description
Data name
fRNAdb Summary
DOI
10.18908/lsdba.nbdc00452-001
Description of data contents
Functional RNA Database is a human curated catalog of functional RNAs acquired from journal papers. Each RNA is associated to a base sequence, genomic locus, putative secondary structure, citation, etc.
Data file
File name :
frnadb_summary.zip
File URL :
File size :
46.5 MB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/frnadb_summary#en
Data acquisition method

Main RNA information was acquired from journal papers and existing RNA databases. Computational prediction results were used for genomic loci and secondary structures. Citation information was extracted from PubMed database by searching titles/abstracts including corresponding family names.

Data analysis method

-

Number of data entries

510,055 entries

Data detail
Data item Description
ID

Entry ID

Accession

Accession

Description

Description

SO name

Sequence Ontology

Organism

Organism

Xref

Cross Reference

Length

Sequence Length

Sequence

Sequence

Second Structure Thumbnail

Thumbnail of RNA secondary structure image

Second Structure (PNG)

RNA secondary structure image (PNG)

Second Structure (PDF)

RNA secondary structure image (PDF)