[ Japanese | English ]
About This Database

Data of structural flexibility

Data description
Data name
Data of structural flexibility
DOI
10.18908/lsdba.nbdc00400-004
Description of data contents
The regions of structural flexibility are selected with the Z score of temperature factor (B-factor) values by Cα atom of each residue in PDB.
Data file
File name :
confc_disorder.zip
File URL :
File size :
3.7 MB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/confc_disorder#en
Data acquisition method

PDB (Protein Data Bank)

Data analysis method

The regions of structural flexibility are selected with the Z score of temperature factor (B-factor) values by Cα atom of each residue in PDB.

Number of data entries

130,563 entries

Data detail
Data item Description
confID

ID of this table

classID

ID of structural change class

pdbID

PDB ID

pdbChain

PDB chain ID

method

Experimental technique used for the structure determination

program

Refinement program

temperature

Temperature at experiment

resolution

Resolution

Rfactor

R-factor

depositDate

Deposition date

depositDateClass

Date format

ECnumber

EC number

SCOPID

SCOP ID

domainNumber

Number of domains

complex

Type of complex

SEQRESLength

SEQRES Length

ATOMLength

ATOM Length

REMARK465

Whether REMARK 465 (describing missing residues) is used

disorderNumber

Number of disorder regions

disSumLength

Total number of disordered residues

maxDisLength

Maximum length of disorder region

minDisLength

Minimum length of disorder region

disSeqresPosition

Position of disorder regions by SEQRES

disAtomPosition

Position of disorder regions by ATOM

temperatureFactorAve

Average of temperature factor

temperatureFactorStddev

Standard deviation of temperature factor

checkOccupy

Whether OCCUPANCY less than 1.00 is used

modelNumber

Whether MODEL NUMBER is used