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Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data acquisition method ⇅	Data analysis method ⇅	Data detail
Sample information	RED II INAHO	10.18908/lsdba.nbdc01557-003	Sample information used as control sample or target sample.	The sample was used in the experiment as control sample or target sample.	-	Data detail open_in_full
Data Relationship Matrix	RefEx		A table of the relationship among different type of data.	-	-	Data detail open_in_full
Gene Expression Data	RefEx		Gene expression data collected by EST, GeneChip, CAGE, or RNA-seq Each data is named "RefEx_expression_[experimental method][the number of tissue classes]_[species]" in general. e.g. RefEx_expression_EST10_human Nevertheless, some data collected by CAGE are named "RefEx_expression_CAGE_all_[species]". e.g. RefEx_expression_CAGE_all_human	EST human,mouse,rat: INSD GeneChip human: GSE7307（Human body index - transcriptional profiling） mouse: GSE10246（GNF Mouse GeneAtlas V3） rat: GSE952（Transcriptome analysis in rat） CAGE human: PRJDB3010 (A promoter level mammalian expression atlas (human, ChIP-Seq)) mouse: PRJDB1100 (FANTOM5 Mouse CAGE) RNA-seq human: PRJEB2445 (RNA-Seq of human individual tissues and mixture of 16 tissues (Illumina Body Map)) mouse: PRJNA30467（Mapping and quantifying mammalian transcriptomes by RNA-Seq; brain, liver, muscle）	https://github.com/dbcls/RefEx/tree/master/Rawdata_Processing	Data detail open_in_full
ID Relation Table	RefEx		Relation table of Gene IDs.	-	-	Data detail open_in_full
Sample Annotations	RefEx		Sample annotations provided by each project. Columns are different in CAGE data and GeneChip data.	Provided by each project	-	Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data acquisition method	Data analysis method	Data detail