| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Links to J-GLOBAL | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-004.V011 |
This RDF data includes information of links to other databases, such as J-GLOBAL which contains information of chemical substances, genes, researchers, literature, patents, and other scientific and technologies information (http://jglobal.jst.go.jp/). |
NBDC_NikkajiRDF_link2JGLOBAL.ttl.gz
(1.8 MB) |
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This RDF data was constructed from the data collected by J-GLOBAL knowledge （https://stirdf.jglobal.jst.go.jp/ :closed in 2018）. |
219,663 triples |
Data detail
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| Links to Other DBs (based on PubChem) | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-007.V011 |
This RDF data includes information of links between Nikkaji substances and PubChem substances, compounds and GlyTouCan (https://glytoucan.org/) by using skos:exactMatch and skos:closeMatch. This is a result of BioHackathon 2015 (http://2015.biohackathon.org/hackathon). |
NBDC_NikkajiRDF_link2OtherDBs_basedOnPubChem.tar.gz
(49 MB) |
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The data was created from the mapping data between Nikkaji substances, and PubChem substances, and compounds which were acquired using UniChem FTP service (https://pubchem.ncbi.nlm.nih.gov/upload/). |
34,671,881 triples |
Data detail
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| Links to Other DBs (based on UniChem) | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-006.V011 |
This RDF data includes information of links between Nikkaji substances and chemical substances registered in other databases* by using skos:closeMatch. This is based on a work at https://www.ebi.ac.uk/unichem/ .
|
NBDC_NikkajiRDF_link2OtherDBs_basedOnUniChem.tar.gz
(69 MB) |
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The data was created from the mapping data between Nikkaji substances, and chemical substances in other databases which were acquired using UniChem FTP service (ftp://ftp.ebi.ac.uk/pub/databases/chembl/UniChem/). The mapping data between Nikkaji and KNApSAcK substances was created using the InChIKey provided by KNApSAcK (http://kanaya.naist.jp/KNApSAcK/). |
18,910,927 triples |
Data detail
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| MOL/SDF | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-009.V011 |
This RDF data contains the URL-encoded content of MOL/SDF files of chemical substances registered in Nikkaji by using CHEMINF, SIO and other ontologies. We recommend using this RDF together with the Core RDF. |
NBDC_NikkajiRDF_SDF.tar.gz
(957MB) |
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MOL/SDF informations were obtained from J-GLOBAL Chemical Substance Database. Only available for substances with 'Substance Type: Decided Structure'. |
3,493,208 compounds |
Data detail
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| Molecular Formula and Molecular Weight | NBDC Nikkaji RDF | 10.18908/lsdba.nbdc01530-02-005.V011 |
This RDF data contains molecular formula and molecular weight of chemical substances registered in Nikkaji by using CHEMINF, SIO and other ontologies. |
NBDC_NikkajiRDF_MFMW.tar.gz
(507 MB) |
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The data was converted from data of molecular formulas and molecular weights in Basic Information (http://dbarchive.biosciencedbc.jp/en/nikkaji/data-1.html). |
3,671,776 compounds |
Data detail
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata