| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| BLOCKS List | DB-SPIRE | 10.18908/lsdba.nbdc00411-004 |
The list shows BLOCKS entries and PDB entry/chain matching status. |
dbspire_blocks_list.zip
(113 KB) |
http://togodb.biosciencedbc.jp/togodb/view/dbspire_blocks_list#en |
BLOCKS |
word search, motif search |
5,900 entries |
Data detail
open_in_full
|
| PROSITE - PDB SEQRES matching | DB-SPIRE | 10.18908/lsdba.nbdc00411-003 |
Sequence numbers of PDB entries/chains whose SEQRES matches a PROSITE entry |
dbspire_prosite_pdb_seq.zip
(4.1 MB) |
http://togodb.biosciencedbc.jp/togodb/view/dbspire_prosite_pdb_seq#en |
PROSITE, PDB(Protein Data Bank) |
word search, motif search |
654,777 entries |
Data detail
open_in_full
|
| PROSITE Information | DB-SPIRE | 10.18908/lsdba.nbdc00411-002 |
It shows PROSITE entries and PDB entry/chain matching status. |
dbspire_prosite_info.zip
(54.8 KB) |
http://togodb.biosciencedbc.jp/togodb/view/dbspire_prosite_info#en |
PROSITE |
word search, motif search |
2,178 entries |
Data detail
open_in_full
|
| PROSITE List | DB-SPIRE | 10.18908/lsdba.nbdc00411-001 |
The list shows PROSITE entries and PDB entry/chain matching status. |
dbspire_prosite_list.zip
(29.1 KB) |
http://togodb.biosciencedbc.jp/togodb/view/dbspire_prosite_list#en |
PROSITE |
word search, motif search |
1,565 entries |
Data detail
open_in_full
|
| Allele Frequency Data | dbQSNP | 10.18908/lsdba.nbdc00042-001 |
SNP allele frequencies in Japanese and European populations, determined by quantitative fluorescent PCR-SSCP analysis of pooled DNA. |
dbqsnp_frequency.zip
(159 KB) |
http://togodb.biosciencedbc.jp/togodb/view/dbqsnp_frequency#en |
Most of SNPs described here were initially collected by Sanger sequencing of transcription start sites (TSSs) of 8 randomly picked Japanese. Short fragments harboring the SNPs were further analyzed for their allele frequencies in several populations using quantitative fluorescent PCR-SSCP analysis of pooled DNA samples (Kukita et al. 2002; Baba et al. 2003: Tahira et al. 2005). A part of the results of association study of breast cancer patients (Miyagi et al. unpublished) and lupus erythematosus patients were also included (Miyagawa et al. 2008; Sakaguchi et al. unpublished). |
Data analysis of fluorescent SSCP analysis was performed using QUISCA software that was integrated in dbQSNP system (Higasa et al. 2002; Sasaki et al. 2001; Tahira et al. 2005). SNPs in dbQSNP were submitted to dbSNP of NCBI under the handle name of KYUGEN, and refSNP ID #s were identified or given. |
16,503 entries |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata