ChIP-Atlas: Target genes

Potential target genes for HMGB1

Query protein: HMGB1
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3585704 | Lung fibroblasts
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HMGB1's Target genes

◢ HMGB1: Average

◢ SRX2765964: HUVEC

◣ SRX3585704: Lung fibroblasts

◢ HMGB1: STRING

MAMDC2
KMT2A
USP31
RAD51AP2
METTL3
MUC3A
UCKL1
SPAAR
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
TNFRSF6B
CCDC88A
GFM2
MTRNR2L8
HSPE1-MOB4
HSPE1
HSPD1
GTF2H4
CRH
CCDC200
MRPL28
C7orf25
LSM6
TRIM48
LCORL
DLAT
MRPL48
DARS2
CENPL
FRG2C
KCTD16
YIPF5
NOTCH2
TANK
EIF2D
MED23
MAIP1
NBPF1
MRPS30
LYNX1-SLURP2
LYNX1
ATE1
FANCF
EID1
PLK4
ITGB3BP
EFCAB7
ATL1
EFHD1
COX18
KCNJ2
NBN
RNPC3
NUDT4B
NUDT4
VRK2
TTC21B
STK17A
TMEM71
PHF20L1
SAXO1
RRAGA
PHF3
TMA16
NFE2L2
DUX4
PIP4P2
FRG2
CLN3
CDCA3
APOBR
MRPL42
AGBL3
PHIP
LDHB
SPEF2
RPGRIP1L
FTO
BBS10
DTWD2
ABCD3
MTIF3
MFAP3
FAM114A2
CEP85L
FRA10AC1
IL18R1
COG6
CAP2
POLR2M
WDR35
USP30
ANAPC10
ABCE1
CMTM6
IKZF2
SCOC
AP3B2
C8orf88
FEM1C
NBPF3
LCA5
NSFL1C
AFF1
ZNF250
ORC4
MBD5
KRR1
GINS3
ATR
CDK8
LRRC46
CC2D2B
GPR89A
WDPCP
MDH1
PFKM
FOXO3B
PDCD2
MPHOSPH6
ZNF891
ZNF10
GK5
WDR3
MTF2
GDAP2
DBR1
ZNF32
BET1
SELENOT
DCP1A
CCDC178
CBWD5
SLC30A9
CBWD3
ZNF214
NLRP14
SNRPD1
COBLL1
SPATA17
GPATCH2
UFL1
SULT6B1
FAM227B
DTWD1
DNAH2
CTR9
CNOT4
WDR11
DERL1
CETN3
DECR1
SLC25A40
DBF4
BLOC1S6
PTX3
LAMA2
UFM1
C12orf66
TPR
ODR4
DHX36
SUGCT
MPLKIP
CLDN12
ACER3
FAM126A
SOAT1
GAP43
FBXW4
UBE3D
NRAS
DOP1A
DHRS7
PCBP2
PDCD6IP
SNRPF
SLC39A10
TMEM106B
GPC6
TCAF1
NBPF15
MRPS28
H4C11
ZNF780A
USP15
TMEM143
SYNGR4
MTRNR2L2
MSH3
DHFR
RICTOR
C10orf88
TSN
TMEM260
SNX16
GNPDA2
DSCC1
TNPO1
METTL25
CCDC59
CSTF2T
VPS45
SUPT7L
SLC4A1AP
RBIS
KDM8
FEM1A
ASCC3
CCT2
RPSA
PRPF18
STX18
WDR31
TWF1
RNF146
ZNF93
GHR
NAE1
PINX1
DNAJC3
ZNF670
RAG2
IFTAP
BCAP29
TMED7-TICAM2
TMED7
GUCY1A1
RNF150
CDKN2B
USP45
PUS10
PEX13
HEMK1
C3orf18
ARHGAP28
HLCS
AHCTF1
NCOA7
REL
MRPL39
C8orf37
IRAK1BP1
MPHOSPH10
MCEE
ZCCHC7
GLCE
HENMT1
GTF2B
CREBZF
KIFAP3
KBTBD8
TMIGD3
ADORA3
ZSWIM2
PCNX4
INVS
GLIPR1L2
ERP44
DEPDC1B
PDE4DIP
C21orf91
MRPL44
VPS41
CBWD6
ARL6
ANKRD36B
PRPF38B
VWA8
SNX15
PDGFD
ZSCAN25
RFT1
MRPL1
DENND1B
TMEM43
CHCHD4
GNAL
RTRAF
COL23A1
C2orf69
HEPACAM2
UMAD1
BAZ2B
VPS50
TMX1
RBBP9
NPM1
MTFR1
FNTB
NT5DC1
ANKRD36C
ALG10
GDAP1
ZMPSTE24
TAP2
KLHL20
RUFY2
TANC2
ZNF675
ZNF91
PPIP5K2
CBR1
ZNF510
ZNF165
TMBIM4
SYT1
RAB3C
MAP9
LRRC57
HAUS2
TMEM38B
RBM45
PDE11A
LTA4H
SERPINI1
RPS15A
PDCD10
ODF2L
MXD1
ATP10D
IRAK3
STX7
LAMTOR3
RC3H1
HSF2
HMGB2
BLOC1S5
TMEM242
KATNBL1
B3GALT1
ZNF695
TTC30A
PEMT
POP7
KDM5A
CCDC77
USP47
TRIQK
PAXBP1
WDR87
SIPA1L3
AGK
SRRD
HPS4
NSUN6
PPIC
SCRN3
CIR1
SFR1
INTS12
GSTCD
DDX60
SESN1
VEZT
FGD6
CHD9
ATP9B
SMARCA5
SS18
CAT
TRA2B
ITGA4
RGS2
ELMOD2
C18orf21
ZCCHC4
USP32
TTC26
SCLT1
C4orf33
CHAMP1
ZBTB14
SPRED1
FAM174A
SEC22B
RPS6KC1
SLF1
KIAA0825
TOX4
SLC25A36
SCYL2
RAB2B
RAB27B
PSMD14
NEK1
DEPDC4
CTH
HMGB1
HSCB
CHEK2
ZNF43
NUP54
USPL1
TBCK
SENP1
RBM8A
PTCD2
MRPS27
AIMP1
ZNF391
RFC3
ETFDH
C4orf46
VCPIP1
C8orf44-SGK3
FH
GUF1
H1-3
COX7C
COPB1
BIRC2
PREP
RAB11FIP2
RAP1GDS1
ZFP1
NKAIN2
SVIP
UAP1
TMED5
CCDC18
RSPH4A
MPP5
ZNF709
ZNF205
TMLHE
SPRY3
IFNAR1
GATB
ALKBH8
TUSC1
ACYP2
SLC25A26
TEFM
C5orf51
CENPC
FAM217B
DTD2
WDR36
SYCP2
IFT74
GHITM
TMTC1
CDCA7
SWAP70
CGRRF1
THBS4
MTX3
TUBE1
FAM229B
WBP11
C12orf60
ZNF649
ZNF614
ZNF330
RABL3
POLR3E
NMI
GTF2E1
GPN3
GFM1
FAM216A
CNOT2
ANKRD46
ZBTB20
RANBP17
PCSK5
PLPP1
CUL2
ZNF326
ZNF736
ZNF518A
SLC9B2
RPS7
PNISR
GLYATL1
CCNC
BTBD10
BZW1
MPPE1
MTMR6
OPRL1
LKAAEAR1
ZNF286A
ZFC3H1
THAP2
PGM2L1
KANSL2
ZNF227
WDHD1
VTA1
TSPAN12
SOCS4
SEMA3A
OTUD6B
NPRL3
NMBR
BCL9
SENP6
ZNF76
SH3GLB1
SNX12
ZNF782
ZNF92
EXOC5
AP5M1
NET1
ZNF343
SIKE1
PGBD1
NCOA4
HEATR5B
GPATCH11
FAM110B
EEF1AKMT1
CHD8
APOL2
PRRC2B
KPNA5
CUL5
USP40
USP16
ULBP1
TCTEX1D1
RPL21
REXO5
NACA
METTL16
GNG11
ERI2
CEP57L1
BIN3
ACVR2A
SUCLG2
GTPBP10
SLC2A12
PRDM7
TNPO3
BMT2
HSD17B4
RAB8B
USP38
ZNF491
TSGA10
OCIAD1
NUP35
MED30
CDK5RAP2
C2orf15
PTBP2
AKAP12
WAC
FBH1
ANKRD16
AGGF1
ZKSCAN7
SNRPD3
GUCD1
GOLM2
CAND1
ZNF74
ZNF322
WDR61
NCEH1
EIF5A2
CEP83
C14orf39
ADAMTS3
PRKCQ
SRI
TMEM248
RABGAP1L
TMCO4
STEAP1B
COMMD10
TANGO6
LDB2
SLC25A27
CYP39A1
NUP58
CCNA2
RMDN1
ZNF780B
TMTC3
TMEM168
RPUSD4
RPS4X
MBIP
HERC4
GPR37
FAM118B
CPNE3
CEP290
ACOX3
UBE2E2
PDIK1L
MKRN2OS
MKRN2
MINPP1
HIF1A
PLEKHA5
COG3
TUBGCP3
CHAC2
COQ3
HEXA
ZNF300
SLFN11
PRRC2C
PPWD1
LRPAP1
CENPK
TMX4
GCSH
ADGRL1
PIGN
XPR1
MIS18A
DCAF10
EPHA3
ZC3H14
TP53I3
ZNF624
ZNF17
SREK1IP1
PBLD
NAP1L1
LIN7A
HNRNPH3
CWC27
CLCN3
RAET1G
PROS1
ITGAV
AKAP5
TTC39B
ERICH2
PELO
ITGA1
RBM12B
PEX3
ADAT2
GOT2
C1orf56
KLHL7
ASNS
ZW10
RNF7
SUCO
ZNF471
ZFYVE16
THAP5
SAXO2
MRPL16
LHFPL6
KCNK12
GTF2H2
GORAB
EFL1
DNAJC19
DNAJB9
CEP70
CEP128
ATF7IP
AQR
MCU
SLC30A1
PLEKHA8
FKBP14
CTNNB1
TLK1
KCNH1
HAPLN1
ZNF253
SARAF
AADAT
NAA16
MTRF1
TADA1
NANS
ZSCAN12
UTP15
TMEM26
TMCO1
SPNS1
SPATA13
INTS10
FXR1
FAM240C
CFTR
C2orf73
ANKRA2
KPNA1
SRGAP1
ABR
MTHFD2L
ITPR2
RPL7
RDH10
PDCD5
METAP1D
MKLN1
TFAM
ING3
ANKRD18B
TNKS
L3HYPDH
JKAMP
PTDSS1
MTERF3
RMDN2
GLUL
NDUFS3
KBTBD4
ZNF628
ZNF470
ZNF37A
PCCA
NEMF
GRIK2
FIS1
CMSS1
ALKBH3
TRAK2
STRADB
THSD7A
SNX2
RNF19B
THAP9
SEC31A
SEH1L
ZNF708
TOMM5
TMEM17
PSMA1
ZNF714
DEPDC1
ZSCAN31
ZNF25
RBBP5
KCNIP2
IL15
DNAJC24
DCDC1
ACP6
H2AZ2
SLC25A24
HECTD1
RAD52
CASD1
CCDC93
FAM214A
STX17
ETNK1
MTRR
FASTKD3
COA6
ZSCAN5A
ZNF45
RPL32
PALLD
GOSR1
GCFC2
CEP164
CCDC83
ST7
CCSER2
PHACTR2
H2BU1
H2AW
PHF10
MTMR2
CFAP299
MANEA
QTRT2
CCDC191
RWDD1
CACNB2
GUCY1B1
PRPF8
PIMREG
MMUT
LUC7L2
FMC1-LUC7L2
FMC1
DZIP3
DYNC1I2
CRISPLD1
CPLX2
CIP2A
CENPQ
ANAPC5
GRAMD1C
TRPS1
ELAC1
SOX5
MIA3
CAPRIN2
ANKRD17
SLC25A21
KBTBD3
AASDHPPT
LOC100289561
RPL27A
DNAH14
NHLRC2
DCLRE1A
MTX2
PIGK
CNTLN
ZNF441
FBXW7
KITLG
THUMPD1
COMMD8
SMAP2
ZNF35
ZNF24
ZC3H15
TNFRSF19
STAT6
MTIF2
LMTK3
JMJD7-PLA2G4B
JMJD7
IFI27L2
CHIC1
CFAP69
CFAP20
CAMLG
C2orf42
SYT7
MSRA
MAP3K1
GCA
IQSEC3
UBE2D1
SKP1
TIMM23
SRSF7
SRSF6
PDE3B
CCDC66
DELE1
ZNF717
SC5D
RBM28
MMS22L
LXN
LRP2BP
CRB1
ANKRD37
SSH2
EDEM3
CRYM
ZNF254
LRRC6
WASHC4
KBTBD7
ZNF202
FANCL
ZFP62
TRAPPC4
RPS25
CYP51A1
ZSCAN22
TRIM16L
TCHP
TASP1
SPICE1
SLC35B1
NHSL1
FARSB
STX11
NUTM2E
POGLUT3
ERAP1
TECPR2
SPR
CINP
ANKRD36
PDXDC1
UBQLN1
PGM1
ZNF720
RAB28
ADH5
LSM10
IFRD1
PPM1L
FNIP1
TFDP2
PSTK
DMXL2
ZNF354C
TMEM217
TBC1D22B
SPI1
SLC10A7
ATF2
ANP32E
DPP9
LRRC37A3
RNF135
HMGN1
NAPEPLD
LRFN2
TMOD3
LANCL2
MAPRE2
ZNF239
PRMT6
ACAT1
BMS1
IL12A
UEVLD
CEP55
FIP1L1
ZNF222
ZCWPW2
UBE2T
TFPI2
SLC25A30
PPP1R42
PPP1R12A
PIAS1
ORC2
MICU2
ICA1L
HNRNPA3
FASTKD1
CRADD
AZI2
CALM2
KANSL1L
SLC9A1
PTPN14
RC3H2
DLC1
ADRA2B
FAM135A
ABCC5
SPDYA
IQCH
AAGAB
FAM162A
CCDC58
RPS6
PDE12
AASS
YY1AP1
DAP3
ZSCAN9
WDR12
TXNL4B
TIMMDC1
SLC37A3
SKAP2
RTTN
RNF141
PIGU
NUF2
NRXN3
NHEJ1
EXOSC3
ERGIC2
DHX38
CARF
ANK3
ALDH7A1
ZMYM4
FBXL4
PHTF1
H3C13
H2BC18
NFRKB
ZNF429
WDR77
ATP5PB
MRPS15
TBC1D19
KCNK13
NRDE2
RSL24D1
ZBTB26
UGDH
TRMT1L
TARDBP
SWT1
PIH1D2
PAFAH2
NKAPD1
LRRD1
CEP97
ATL2
NUDT3
RNF103-CHMP3
RMND5A
B3GNT2