About This Database

YAC contig information

Data description

Data name

DOI

10.18908/lsdba.nbdc00318-06-001

Description of data contents

YAC contigs on the rice chromosomes

Data file

File name :

rgp_physicalmap_yac_contigs.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/rgp-physicalmap/LATEST/rgp_physicalmap_yac_contigs.zip

File size :

1 KB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/rgp_physicalmap_yac_contigs#en

Data acquisition method

The range including YAC contig is shown for each the divided region within the chromosome. DNA marker names are different to those in "YAC clone information". For example, P61 and P0061 represents the same marker.

Please refer to the following literature for the acquisition method of YAC clone data.

Chromosome 1 : Wang et.al (1996), DNA Research, 3(5): 291-296.
Chromosome 2 : Umehara et.al (1997), DNA Research, 4(2): 127-131.
Chromosomes 3 and 11 : Tanoue et.al (1997), DNA Research, 4(2): 133-140.
Chromosomes 4 and 7 : Koike et.al (1997), DNA Research, 4(1): 27-33.
Chromosome 5 : Saji et.al (1996), DNA Research, 3(5): 297-302.
Chromosome 6 : Umehara et.al (1996), Genome Research, 6(10): 935-942.
Chromosomes 8 and 9 : Antonio et.al (1996), DNA Research, 3(6): 393-400.
Chromosomes 10 and 12 : Shimokawa et.al (1996), DNA Research, 3(6): 401-406.

Data analysis method

Number of data entries

38 entries

Data detail

Data item	Description
Chrom. No.	Chromosome number
Region	Region number
Physical map image	The file name of rice physical map
First marker	First DNA marker
Distance of first marker (cM)	Distance of the first marker from the top of each chromosome (cM)
Last marker	Last DNA marker
Distance of last marker (cM)	Distance of the last marker from the top of each chromosome (cM)