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About This Database

Genome analysis methods

Data description
Data name
Genome analysis methods
DOI
10.18908/lsdba.nbdc01194-01-005.V003
Description of data contents
The current status and related information of the genomic analysis about each organism (March, 2014). In the case of organisms carried out genomic analysis, the details of analytical method, references and information of genomic database are shown in this list.
Data file
File name :
pgdbj_dna_marker_linkage_map_genome_analysis_methods_en.zip
File URL :
File size :
5.8 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/pgdbj_dna_marker_linkage_map_genome_analysis_methods_en
Data acquisition method

These information was collected from other databases and/or papers.

Data analysis method

-

Number of data entries

55 entries

Data detail
Data item Description
Scientific name

Scientific name

Status

Status of genome analysis

Chromosome number

Chromosome number

Genome size

Genome size

Year

Year of genome analysis

Sequencing method

Sequencing method

Read counts

Read counts

Covered genome region

Covered genome region

Sequencing depth

Sequencing depth

Assembly method

Assembly method

Number of scaffolds

Number of scaffolds

Contig counts

Contig counts

Gene annotation method

Gene annotation method

Number of predicted genes

Number of predicted genes

Genome database

Genome database information

Assembly release

Assembly release

Annotation release

Annotation release

Reference1 (DOI)

Reference1 (DOI)

Reference1 (PMID)

Reference1 (PMID)

Reference2 (DOI)

Reference2 (DOI)

Other reference (DOI)

Other reference (DOI)