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Life Science Database Archive
MicrobeDB.jp

Refsequence

Data detail

info Data name Refsequence
info DOI 
info Version 
V2
V1-
info Description of data contents 

Microbial complete genome and high quality draft genome annotation RDF data. We used corresponding amino acid sequence data for MBGD ortholog clustering and functional assignments of metagenome data. Information on each replicon in the genomes are described in a RDF file using FALDO, SO, and other ontologies.
Data file (compressed in tar.gzip) consists of directories divided by genome. Each directory has a genome RDF file to indicate replicon.

info Data file 
File name:
refsequence.tar.gz
File URL:
https://dbarchive.biosciencedbc.jp/data/microbedb/LATEST/refseq.tar.gz
File size:
49 GB
info Simple search URL -
info Data acquisition method 

Microbial high quality draft (identified by using the MBGD criteria) and complete genome annotation data were obtained from NCBI RefSeq and GenBank.

info Data analysis method -
info Number of data entries 

4,165,436,499 triples

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