[Credits]

Life Science Database Archive
KOME

Genome annotations

Data detail

info Data name Genome annotations
info DOI 
info Description of data contents 

Extracted the hits related to rice genomes from GenBank blastn/blastx results.

info Data file 
File name:
kome_genome_annotation.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_genome_annotation.zip
File size:
514 KB
info Simple search URL 
info Data acquisition method 

Performed blastn searches against Genbank nucleotide sequences and blastx searches against Genbank amino sequences.

info Data analysis method 

Showing the entries related to rice genomes in GenBank blastn/blastx results.
"Related to rice genomes" is defined as follows:
The word "Oryza sativa" or "rice" is included in the definition of the entry and the word "BAC", "PAC", "chromosome Genomic", or "Genomic sequence" is included in the entry.

info Number of data entries 

23,768 entries

Data itemDescription
ACCESSION_NO Accession number of the full-length cDNA clone
CLONE_NAME Name of the full-length cDNA clone
BLAST_TYPE Type of BLAST program (blastn or blastx)
HIT_ACCESSION Accession number of the GenBank entry
DIVISION GenBank division
DEFINITION Definition of the GenBank clone
RANK Ranking in the blast search result
SCORE Score in the blast search result
EXPECT Expect value in the blast search result