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About This Database

Genome annotations

Data description
Data name
Genome annotations
DOI
10.18908/lsdba.nbdc00120-009
Description of data contents
Extracted the hits related to rice genomes from GenBank blastn/blastx results.
Data file
File name :
kome_genome_annotation.zip
File URL :
File size :
514 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_genome_annotation#en
Data acquisition method

Performed blastn searches against Genbank nucleotide sequences and blastx searches against Genbank amino sequences.

Data analysis method

Showing the entries related to rice genomes in GenBank blastn/blastx results.
"Related to rice genomes" is defined as follows:
The word "Oryza sativa" or "rice" is included in the definition of the entry and the word "BAC", "PAC", "chromosome Genomic", or "Genomic sequence" is included in the entry.

Number of data entries

23,768 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

BLAST_TYPE

Type of BLAST program (blastn or blastx)

HIT_ACCESSION

Accession number of the GenBank entry

DIVISION

GenBank division

DEFINITION

Definition of the GenBank clone

RANK

Ranking in the blast search result

SCORE

Score in the blast search result

EXPECT

Expect value in the blast search result