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Life Science Database Archive
KOME

GenBank blastn search result

Data detail

info Data name GenBank blastn search result
info DOI 
info Description of data contents 

Results of blastn searches against GenBank nucleotide sequences

info Data file 
File name:
kome_genbank_blastn_search_result.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_genbank_blastn_search_result.zip
File size:
24 MB
info Simple search URL 
info Data acquisition method 

Performed blastn searches against Genbank nucleotide sequences.

info Data analysis method 

Performed homology searches against sequences obtained from NCBI GenBank Release 150.0 (15/08/2005) using the blastn program (blast2.2.12).
Sequences used in the searches were located in the following 10 out of 18 GenBank divisions.
1. PRI - primate sequences
2. ROD - rodent sequences
3. MAM - other mammalian sequences
4. VRT - other vertebrate sequences
5. INV - invertebrate sequences
6. PLN - plant, fungal, and algal sequences
7. BCT - bacterial sequences
8. VRL - viral sequences
9. PHG - bacteriophage sequences
13. PAT - patent sequences
The results are filtered with Expect values lower than 1e-10.

info Number of data entries 

1,144,403 entries

Data itemDescription
ACCESSION_NO Accession number of the full-length cDNA clone
CLONE_NAME Name of the full-length cDNA clone
RANK Ranking in the blast search result
ACCESSION Accession number of the GenBank entry
DEFINITION Definition of the GenBank clone
DIVISION GenBank division
SCORE Score in the blastn search result
EXPECT Expect value in the blastn search result
IDENTITIES Identities in the blastn search result
STRAND1_1 Strand direction of the subject sequence
STRAND1_2 Strand direction of the query sequence