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About This Database

GenBank blastn search result

Data description
Data name
GenBank blastn search result
DOI
10.18908/lsdba.nbdc00120-007
Description of data contents
Results of blastn searches against GenBank nucleotide sequences
Data file
File name :
kome_genbank_blastn_search_result.zip
File URL :
File size :
24 MB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_genbank_blastn_search_result#en
Data acquisition method

Performed blastn searches against Genbank nucleotide sequences.

Data analysis method

Performed homology searches against sequences obtained from NCBI GenBank Release 150.0 (15/08/2005) using the blastn program (blast2.2.12).
Sequences used in the searches were located in the following 10 out of 18 GenBank divisions.
1. PRI - primate sequences
2. ROD - rodent sequences
3. MAM - other mammalian sequences
4. VRT - other vertebrate sequences
5. INV - invertebrate sequences
6. PLN - plant, fungal, and algal sequences
7. BCT - bacterial sequences
8. VRL - viral sequences
9. PHG - bacteriophage sequences
13. PAT - patent sequences
The results are filtered with Expect values lower than 1e-10.

Number of data entries

1,144,403 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

RANK

Ranking in the blast search result

ACCESSION

Accession number of the GenBank entry

DEFINITION

Definition of the GenBank clone

DIVISION

GenBank division

SCORE

Score in the blastn search result

EXPECT

Expect value in the blastn search result

IDENTITIES

Identities in the blastn search result

STRAND1_1

Strand direction of the subject sequence

STRAND1_2

Strand direction of the query sequence