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About This Database

Japonica genome blast search result

Data description
Data name
Japonica genome blast search result
DOI
10.18908/lsdba.nbdc00120-011
Description of data contents
Results of blastn searches against japonica genome sequences
Data file
File name :
kome_japonica_genome_blast_search_result.zip
File URL :
File size :
802 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/kome_japonica_genome_blast_search_result#en
Data acquisition method

Genome contig sequences of japonica rice used for the searches were obtained from the TIGR Rice Genome Database at the time of Oct. 1st, 2005.

Data analysis method

Performed blastn (blast 2.2.12) searches against the japonica rice genome sequences.
The results are filtered with Expect values lower than 1e-10.

Number of data entries

35,778 entries

Data detail
Data item Description
ACCESSION_NO

Accession number of the full-length cDNA clone

CLONE_NAME

Name of the full-length cDNA clone

BAC_ACCESSION_NO

Accession number of the GenBank entry

DEFINITION

Definition in the GenBank entry

EXPECT

Expect value in the blastn search result

SCORE

Score in the blastn search result