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Life Science Database Archive
KOME

Japonica genome blast search result

Data detail

info Data name Japonica genome blast search result
info DOI 
info Description of data contents 

Results of blastn searches against japonica genome sequences

info Data file 
File name:
kome_japonica_genome_blast_search_result.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/kome/LATEST/kome_japonica_genome_blast_search_result.zip
File size:
802 KB
info Simple search URL 
info Data acquisition method 

Genome contig sequences of japonica rice used for the searches were obtained from the TIGR Rice Genome Database at the time of Oct. 1st, 2005.

info Data analysis method 

Performed blastn (blast 2.2.12) searches against the japonica rice genome sequences.
The results are filtered with Expect values lower than 1e-10.

info Number of data entries 

35,778 entries

Data itemDescription
ACCESSION_NO Accession number of the full-length cDNA clone
CLONE_NAME Name of the full-length cDNA clone
BAC_ACCESSION_NO Accession number of the GenBank entry
DEFINITION Definition in the GenBank entry
EXPECT Expect value in the blastn search result
SCORE Score in the blastn search result