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Life Science Database Archive
Gclust Server

Clustering results

Data detail

info Data name Clustering results
info DOI 
info Description of data contents 

Results of running Gclust program. The data include such information as the requirements for running the program, the cluster ID, the threshold used for cluster grouping, the ID of the sequence belonging to the cluster and the sequence ID of the related group.

info Data file 
File name:
all95m8.hom.1.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/gclust/LATEST/original/all95m8.hom.1.zip
File size:
140MB
info Simple search URL 
info Data acquisition method 

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info Data analysis method 

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info Number of data entries 

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File Composition

Lines 1 to 80: Requirements for running the gclust program.
From line 81 on: Information for each cluster.
  END Related groups

Format for Each Cluster

Group [Cluster ID]: [Number of sequences belonging to cluster] sequences. Final thr =   [Threshold]
Group [Cluster ID]: [Number of sequences belonging to cluster] sequences. Final thr =   [Threshold]
[ID of sequence belonging to cluster]    [Sequence length]    [Presence of homology between sequences within cluster]   Number of rows in the number of sequences belonging to cluster)]  [Part of annotation]
(Individual information of the sequences belonging to the cluster is given.)
…
(List of related group)
  Related groups
  Related groups
    [Related cluster ID](Number of sequences belonging to the cluster ID on left]): [Sequence ID 0]
  END Related groups

Sample of Individual Cluster Information (Case of Cluster ID: 2400)

Group 2400: 38 sequences. Final thr =   1.00e-40
Group 2400: 38 sequences. Final thr =   1.00e-40
DPTM_GSPATP00030510001    306    1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0    no_annotation [corr_length=199
DPTM_GSPATP00030510001    306    1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0    no_annotation [corr_length=199
DPTM_GSPATP00024153001    523    1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0    no_annotation [corr_length=432
DPTM_GSPATP00009361001    519    1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0    no_annotation [corr_length=425
DPTM_GSPATP00019846001    516    1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0    no_annotation [corr_length=425
DPTM_GSPATP00005476001    512    1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0    no_annotation [corr_length=421
DPTM_GSPATP00030509001    181    0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0    no_annotatio
Bja_blr2222=dadA    421    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Rsh_Rsph17029_3842    436    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    FAD_dependent_oxidoreductas
Rsp_RSP_3113=dadA    436    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Bpe_BP2210    429    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Bms_BRA0702    442    0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0    D-amino_acid_oxidase_family_protei
Rhe_RHE_PF00436=dadA    422    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino-acid_dehydrogenase,_small_subunit_protei
Eco_b1189=dadA    432    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenas
Bma_BMA0408=dadA    428    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Rso_RSc0926=dadA    429    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Mlo_mll3992    418    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Sme_SMc03265    429    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0    PUTATIVE_AMINO_ACID_DEHYDROGENASE_TRANSMEMBRANE_P
Eba_ebA1192=dadA    421    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Mes_Meso_0395    421    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0    FAD_dependent_oxidoreductas
Rpa4_RPB_1124    411    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0    D-amino-acid_dehydrogenas
Mlo_mlr9201    412    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0    D-amino_acid_dehydrogenase_small_subuni
Rle_RL2917=dadA    403    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0    putative_D-amino_acid_dehydrogenas
Bma_BMA1447    434    0 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0    D-amino_acid_dehydrogenase,_small_subunit,_putati
Bja_bll6812    421    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0    putative_dehydrogenas
Bpe_BP3009    419    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    putative_D-amino_acid_dehydrogenase_small_subuni
Fal_FRAAL5656    429    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0    D-amino_acid_dehydrogenase_small_subuni
Pst_PSPTO_0255    384    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0    oxidoreductase,_FAD-bindin
Rle_pRL120605    441    0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0    putative_amino_acid_deaminas
Rhe_RHE_PF00361    441    0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0    probable_deaminase_protei
YelB_CYB_1710    365    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0    oxidoreductase,_FAD-bindin
Atu_Atu3414=agaE    441    0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0    agaE_protei
Gox_GOX0632    418    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino_acid_dehydrogenase_small_subuni
Cvi_CV3692    415    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    probable_D-amino-acid_dehydrogenas
Rpa4_RPB_1503    425    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    D-amino-acid_dehydrogenas
PHRA_81898    611    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0    fgenesh1_pg.C_scaffold_65000034;_no_annotation [corr_length=202
PHSO_134707    617    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0    estExt_fgenesh1_pg.C_330097;_no_annotation [corr_length=201
PHSO_134710    617    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0    estExt_fgenesh1_pg.C_330100;_no_annotation [corr_length=201
PoTR_588004    361    0 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1    eugene3.22680003 [corr_length=191
  Related groups
  Related groups
    402(111): CEL_Y106G6H.5_3256361
    402(111): CEL_Y37E3.17_7199405
    422(110): Atu_Atu0194=ord
    422(110): Atu_Atu2560=ord
    422(110): Bsu_BSU11670=gox
    422(110): Atu_Atu3404=ord
    422(110): CME_CMM298
    422(110): PTR_3154
    422(110): Bma_BMAA129
    422(110): Atu_Atu0601=ord
    1221(65): TPS_2062
    1909(45): Atu_Atu233
    1909(45): Bsu_BSU32630=yur
    1909(45): PPT_12185
    1909(45): Atu_Atu2568=thi
    1909(45): TPS_26365
    1950(44): Atu_Atu3050=aga
    1950(44): HSA_6049900
    1950(44): ATH_AT2G24580_1522416
    1950(44): TET_45.m0016
    1950(44): DPTM_GSPATP0002659300
    1950(44): PoTR_67257
    1950(44): PHRA_7561
    1950(44): TPS_3827
    1950(44): TET_20.m0044
    1950(44): CRE_15323
    1950(44): PHSO_13354
    1950(44): PoTR_73748
    2105(42): Atu_Atu0192=dad
    2105(42): Rrub_Rru_A154
    2105(42): Bma_BMAA193
    2105(42): Vvy_VV078
    2105(42): Atu_Atu3293=dad
    2105(42): Bms_BRA0924=dad
    2105(42): Rle_pRL120417=dad
    2105(42): Cvi_CV1914=dadA
    2105(42): Bpe_BP1818=dad
    2105(42): Pst_PSPTO_0101=dad
    2105(42): Mlo_mlr569
    2105(42): Fra_Francci3_347
    2105(42): Rso_RSc050
    2105(42): Bms_BRA063
    2105(42): Atu_Atu336
    2105(42): Atu_Atu4682=dad
    2105(42): Mes_Meso_436
    2105(42): Bja_bll430
    2507(36): Atu_Atu4066=sox
    2507(36): Atu_Atu4310=sox
    2507(36): Atu_Atu4224=sox
    2507(36): Bms_BR0229=sox
    3333(29): HSA_8906179
    3333(29): Atu_Atu163
    4345(24): Atu_Atu395
    5936(18): Bja_blr644
    5936(18): ATH_AT5G67290_1524026
    5936(18): OSA_Os07g015510
    5936(18): CRE_18936
    5936(18): PPT_12138
    5936(18): PoTR_55839
    7620(14): DME_CG10655_1798598
    7620(14): HSA_892370
    7620(14): DME_CG3270_2012972
    7620(14): TPS_26443
    7620(14): Bma_BMA057
    11780(9): Bja_bll671
    12830(8): PoTR_79450
    14449(7): Bja_blr765
    14864(7): PoTR_82388
    14864(7): OSA_Os09g0514100@
    14864(7): OSA_Os09g0514100@
    14864(7): ATH_AT5G48440_7961289
    14864(7): ATH_AT5G48440_7953191
    21463(5): Bma_BMAA141
    21463(5): PHSO_13354
    42665(2): PoTR_79139
    79268(1): HSA_2479715
    81322(1): TPS_2286
    82256(1): DME_CG6385_2013009
    83000(1): PTR_4638
    84704(1): HSA_2136137
    92032(1): HSA_3226132
    94906(1): DME_CG3626_2857110
    98511(1): CEL_Y37E3.17_7199404
    115915(1): PPT_15802
    116951(1): TPS_26144
    122499(1): CRE_18958
  END Related groups