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About This Database

Prefix list for each organism

Data description
Data name
Prefix list for each organism
DOI
10.18908/lsdba.nbdc00464-006
Description of data contents
List of prefixes for organisms used in Gclust. Each prefix is applied to the top of the sequence ID according to each organism. The first line specifies the number of organism species (95). From the second line, the prefix of each organism is listed on each line, and "//END" is entered on the last line.
Data file
File name :
prefix_all95
File URL :
File size :
1KB
Simple search URL
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Data acquisition method

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Data analysis method

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Number of data entries

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Data detail
Data item Description
ATH

Arabidopsis thaliana

CME

Cyanidioschyzon merolae

CRE

Chlamydomonas reinhardtii

OSA

Oryza sativa

OTAU

Ostreococcus tauri

PPT

Physcomitrella patens

PoTR

Populus tricocarpa

DPTM

Paramecium tetraurelia

GTH

Guillardia theta

NGR

Naegleria gruberi

PFA

Plasmodium falciparum

PHRA

Phytophthora ramorum

PHSO

Phytophthora sojae

PTR

Phaeodactylum tricornutum

TET

Tetrahymena thermophila SB210

TPS

Thalassiosira pseudonana

Ana

Anabaena sp. PCC 7120

Ava

Anabaena variabilis ATCC 29413

Glv

Gloeobacter violaceus

Npun

Nostoc punctiforme sp. PCC73102

Pm1

Prochlorococcus marinus MED4

Pm2

Prochlorococcus marinus MIT9313

Pm3

Prochlorococcus marinus SS120

Pm4

Prochlorococcus marinus MIT9312

Pm5

Prochlorococcus marinus NATL2A

Pm6

Prochlorococcus marinus MIT9301

Pm7

Prochlorococcus marinus MIT9303

Pm8

Prochlorococcus marinus MIT9315

Pm9

Prochlorococcus marinus NATL1A

PmA

Prochlorococcus marinus AS9601

S63

Synechococcus sp. PCC 6301

S79

Synechococcus sp. PCC 7942

S81

Synechococcus sp. WH8102

S93

Synechococcus sp. CC9311

S96

Synechococcus sp. CC9605

Syn

Synechocystis sp. PCC 6803

Tel

Thermosynechococcus elongatus

Ter

Trichodesmium erythraeum 405 1

YelA

Cyanobacterium Yellowstone A-prime

YelB

Cyanobacterium Yellowstone B-prime

Caur

Chloroflexus aurantiacus

Cch

Chlorobium chlorochromatii CaD3

Clim

Chlorobium limicola DSM 245

Cph

Chlorobium phaeobacteroides DSM 266

Ctep

Clorobium tepidum

Pvi

Prostheocochloris vibrioformis DSM 265

Rde

Roseobacter denitrificans Och 114

Rpa1

Rhodopseudomonas plustris BisA53

Rpa2

Rhodopseudomonas plustris BisB4

Rpa3

Rhodopseudomonas plustris BisB18

Rpa4

Rhodopseudomonas plustris HaA2

Rpal

Rhodopseudomonas plustris

Rrub

Rhodospirillum rubrum ATCC 11170

Rsh

Rhodobacter sphaeroides ATCC 17029

Rsp

Rhodobacter sphaeroides 2.4.1

Afu

Archaeoglobus fulgidus DSM 4304

Ape

Aeropyrum pernix K1

Atu

Agrobacterium tumefaciens str. C58

Bja

Bradyrhizobium japonicum USDA 110

Bma

Burkholderia mallei ATCC 23344

Bms

Brucella suis 1330

Bpe

Bordetella pertussis Tohama I

Bsu

Bacillus subtilis Marburg 168

Ccr

Caulobacter crescentus CB15

Cvi

Chromobacterium violaceum ATCC 12472

Eba

Azoarcus sp EbN1

Eco

Escherichia coli K-12

Fal

Frankia alni ACN14a

Fra

Frankia sp. CcI3

Gox

Gluconobacter_oxydans_621H

Hal

Halobacterium sp. NRC-1

Mac

Methanosarcina acetivorans str. C2A

Mes

Mesorhizobium sp. BNC1

Mlo

Mesorhizobium loti MAFF303099

Mtu

Mycobacterium tuberculosis H37Rv

Neq

Nanoarchaeum equitans Kin4-M

Pho

Pyrococcus horikoshii OT3

Pst

Pseudomonas syringae pv. tomato str. DC3000

Rhe

Rhizobium_etli_CFN_42

Rle

Rhizobium leguminosarum

Rso

Ralstonia solanacearum GMI1000

Sco

Streptomyces coelicolor A3(2)

Sep

Staphylococcus epidermidis ATCC 12228

Sme

Sinorhizobium meliloti 1021

Sto

Sulfolobus tokodaii str. 7

Vvy

Vibrio vulnificus YJ016

CEL

Caenorhabditis elegans

DCGR

Candida glabrata CBS138

DKLA

Kluyveromyces lactis NRRL Y-1140

DME

Drosophila melanogaster

HSA

Homo sapiens

SPO

Schyzosaccharomyces pombe

S99

Synechococcus sp. CC9902

NCR

Neurospora crassa 74-OR23-1A

SCE

Saccharomyces cerevisiae