About This Database

Sequence Data

Data description

Data name

Sequence Data

DOI

10.18908/lsdba.nbdc00042-002

Description of data contents

SNPs and their flanking sequences were determined by Sanger sequencing of PCR products amplified from randomly picked Japanese individuals (in most cases, eight individuals).

Data file

File name :

dbqsnp_fasta.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/dbqsnp/LATEST/dbqsnp_fasta.zip

File size :

1.0 MB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/dbqsnp_fasta#en

Data acquisition method

SNPs were identified by Phred/Phrap/Polyphred (http://www.phrap.org/; http://droog.gs.washington.edu/polyphred/) and visual inspection. Insertions/deletions were detected by software developed by us (Miura et al. JP-4009481-B2).

Data analysis method

SNPs newly detected in this study was submitted to dbSNP under the handle name "KYUGEN".

Number of data entries

10,848 entries

Data detail

Data item	Description
dbQSNP_id	dbQSNP ID.
allele_Pos	Variation allele position (1st base of variation) on the fasta sequence. It is always the 5' length plus 1.
total_Len	Total number of bases of the fasta sequence, a sum of length of 5', 3' and variation (A length of variation can be more than 1 in the case of ins/del polymorphisms).
Internal_STS_ID	Internal STS ID
alleles	Lists alleles of the SNP separated by '/'.
sequence	Sequence