About This Database

Data of conformation changes by some binding

Data description

Data name

DOI

10.18908/lsdba.nbdc00400-001

Description of data contents

A protein structure pair which ID% (sequence identity) is more than 99%, and Dmax (maximum distance between Cα atoms of superimposed protein structures) is more than 20 Å, is stored.

Data file

File name :

confc_all.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/confc/LATEST/confc_all.zip

File size :

14.2 KB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/confc_all#en

Data acquisition method

PDB (Protein Data Bank)

Data analysis method

The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed.

Number of data entries

352 entries

Data detail

Data item	Description
confID	ID of this table
classID	ID including structural change class information
index	Record Index
pdbIDA	PDB ID compared protein structure A
pdbIDB	PDB ID compared protein structure B
pdbChainA	PDB chain ID compared protein structure A
pdbChainB	PDB chain ID compared protein structure B
confDatafile	Link to conformation analysis file (zip)
confClass	Binding molecular type
confName	Name of binding molecules
dmax	Maximum distance between Cα atoms of superimposed protein structures
rmsd	RMSD of distance between Cα of superimposed protein structures
identity	Protein sequence identity