[ Japanese | English ]
About This Database

Cluster

Data description
Data name
Cluster
DOI
10.18908/lsdba.nbdc01137-002
Description of data contents
Information of clustered sequences including Blastx search results and GO annotations
Data file
File name :
clest_cluster.zip
File URL :
File size :
525 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/clest_cluster#en
Data acquisition method

"Clone" dataset

Data analysis method

Clustering using the phred/phrap program, Blastx homology search against a non-redundant protein database from the NCBI web site, and describing presumed function and GO annotation using the Blast2GO software.

Number of data entries

3,161 entries

Data detail
Data item Description
Cluster ID

ID of the cluster

Description

Description of presumed function of the cluster

Category

Category of affiliation of the cluster

Length

Consensus sequence length of the cluster

Sequence

Consensus sequence

Source

Source clones

No. of clones

Number of source clones

Top Blastx hit (E value < 1e-6)

Gene name of top Blastx hit

ACC No.

Accession number of top Blastx hit

E-value

E-value of top Blastx hit

GO

GO annotation