ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584310 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◣ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
ZNF335
RABL2A
NME6
RABL2B
NUP85
CACTIN
MAPKAPK5
IPO13
VDAC2
VTI1B
POLR3F
DZANK1
NVL
HSPA9
PSMG2
CEP76
SUDS3
DYNC1LI2
EFTUD2
CCDC103
GOSR2
RWDD1
NUP205
LYRM4
FARS2
TBCK
AIMP1
SRD5A1
RPL21
BLCAP
REXO1
HADHB
HADHA
EXOSC5
BCKDHA
POLR2E
MRPS7
GGA3
STAM
C19orf48
PES1
STAM2
NCLN
UPF2
ATP5MG
DCTN1
SKP1
ANAPC7
FARSB
TSNAX
IRGQ
ZNF576
TSN
ISCU
SART3
PNO1
TTC8
ZRANB2
SEC61B
ALG2
COX7A2L
RABGGTB
PDAP1
BUD31
XPNPEP3
ST13
CAPRIN1
SMC2
PCBP1
SF3B3
COG4
TMED1
VARS1
HOXA4
PI4KB
RBBP5
ACTR10
NDUFA4
IQCG
RPL35A
PROSER1
NHLRC3
RPS27A
CLHC1
RPS23
ATP6AP1L
SELENOF
HS2ST1
GOLGA5
EIF4ENIF1
SLC35B1
DPH6
PSMD12
UFM1
OSGEP
APEX1
PAK1IP1
C6orf52
ADK
AP3M1
MRPS5
RPS12
ANK2
DDX39B
RBKS
BABAM2
SUPV3L1
BAG6
ARHGAP24
USP1
NEUROG2
FAM104A
C17orf80
ICE1
ARHGAP11A-SCG5
ARHGAP11A
TM9SF1
RPS29
LRR1
PTGES2
SUCLG1
TLE4
COMMD1
CCT4
C16orf91
PIN4
NDUFA10
PAF1
RPL7
RDH10
TRIM71
ATOH1
PDHB
PRUNE2
BNIP3
METTL11B
HES1
RGS12
VEZT
FGD6
PRDM12
LRIG3
PDHX
APIP
MRTO4
EMC1
PDZRN3
SPTBN1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
TPO
ZFHX4
TAF9
RAD17
AK6
STK36
RNF25
IGFBP2
OAZ3
MRPL9
CEP41
ZCCHC13
EIF2S3
GALNT14
HOXB4
FHL1
HOXA3
SPACA1
ZNF608
PMAIP1
CTXN3
ID1
RAI14
NEUROG3
GORAB
ATOH8
SEC11C
KIF21B
CETN1
TPRA1
PDE12
HOXA2
JAKMIP1
CCDC198
ZGPAT
ARFRP1
SKIL
CNPY2
RARA
ACVR1
KLB
HES3
MTMR7
ELAPOR2
UBE2I
TLE2
NEUROG1
BFSP1
CDC73
LMO1
GTF3A
DDX3X
BICRA
HOXC5
CHD7
GADD45GIP1
DLG2
PPFIBP2
ZNF746
NEO1
CLEC18C
PCBD2
MUSTN1
SSBP2
TMEM237
PPP1R3D
FAM217B
MRPL38
ZNF383
DSCAML1
ID3
PHOX2B
RPN1
USP17L15
FMN2
GTF3C4
DDX31
CLDN2
MEF2C
RAN
ALKBH5
DONSON
MEIS3
CNN3
SPCS1
GLT8D1
SLC39A14
TMPPE
GLB1
RCOR3
CS
CAMTA1
CHD8
LMO2
FAM181A
PBX2
CBX3
NR2F1
IPO11
RCOR1
ARHGAP10
ZNF853
QPRT
PDPN
HOXD3
LIX1
CASC3
RARB
LIN28A
REC8
VANGL2
LGALS12
KMT2A
CLEC18B
FAM162A
CCDC58
CPLX1
TSPAN11
AXDND1
VOPP1
KIF26A
ABAT
SH2B1
ARHGEF28
PHTF1
SRSF11
LRRC40
FGF10
TRDMT1
FGFR4
ARHGEF1
MYLK3
PRSS47
KAT6B
DUSP2
MAD2L2
DRAXIN
DCDC2
SPOCK2
WBP1L
GAS2L3
SOX6
ADM
SH3BP4
DUSP4
PEX2
ANKRD6
HNRNPD
BBS9
ANKLE2
ID2
ST18
SP5
RBPJ
INSM1
CLGN
GATA4
TMEM70
MALRD1
MYRIP
RBBP7
GPR108
GADD45G
CCNDBP1
GRSF1
KAZALD1
ARSG
SPATC1L
MRPL34
RASSF2
FLOT1
NDUFS7
DUSP6
INAFM2
SH3BP2
RNF149
UPF3A
MBD2
FOXP1
RPS10-NUDT3
RPS10
LPIN1
HUS1
MTRNR2L2
MTRNR2L8
HSPA1B
ARID5A
HEXIM2
ZFHX3
SP2
PARK7
NELFA
CCPG1
C15orf65
TIGD1
EIF4E2
RPS6KA1
SEC14L1
C11orf24
KCNAB2
SLCO4C1
KDM3A
GRHL3
CCDC88A
SPECC1
BRWD1
ARHGEF10L
NADK
STK38
NCOA2
FGFRL1
KLF17
NBEAL2
SKIV2L
NELFE
NKD1
CPSF4L
LPCAT3
MTMR4
BIN2
FGR
DIAPH1
CDCA7L
NBPF1
ZNF76
USP15
SNX3
WNT10B
LNPEP
CABIN1
CDC42EP3
DENND2D
CCDC174
DIAPH3
PRDM10
RSRC1
RUNX1T1
POR
TBC1D8
ZCCHC3
NFKBIA
IQCH
AAGAB
CD38
TRAF4
ING1
VAV1
HEBP2
CMTR1
ATP23
PNKD
CNOT2
DHRS3
PCNA
RASSF5
POLR2J3
OTX1
EXOSC4
MINDY2
OTUD7B
IQGAP2
PKN2
FAM110A
PPIB
RYBP
SHB
SMARCD2
PLCB2
NKIRAS1
POLR3A
PCTP
IFRD2
H6PD
PEX14
YTHDF2
NDFIP2
HMGCS1
PRDM1
CFD
SLC35E2B
HESX1
PXYLP1
TBRG4
HIBADH
ARIH2
PLEKHO2
NR1D2
RNF139
JAK3
SH3TC1
CYCS
PDE4D
ZDHHC4
PKM
CCDC114
ZNF740
CSAD
SP7
BNIP2
DYNLL1
SOD2
PIK3AP1
KANSL3
HNRNPA2B1
LTBR
DPP9
CLIC4
CBFA2T3
NR2C1
KCTD6
AKIRIN1
ADCY7
PRSS56
DTNB
DGKZ
TTI2
ATXN1L
SLC35E2A
PTGES3
RBL2
HOXB3
HES5
SRPRA
FCHSD2
TMEM222
SSX2IP
FAF2
C12orf29
RARG
CALM2
ZNF341
CD164
USP3
CTTN
SLC39A13
ANKRD13D
TRMT6
MCM8
TBX2
RMND5A
CSRNP1
MRPS24
TRERF1
SNAPC3
BAZ1B
LAPTM5
TXNRD1
USP42
NOTCH2NLA
ARHGAP4
UNC13D
STX18
SLC10A2
SBNO2
CLTC
PIP4P2
MAP2K1
MAD1L1
MTF2
KCNH2
IL21R
PPCDC
MTCH1
DGAT2
CENPH
ZNF25
RNF125
ATG16L2
RASGRP2
PEAK3
THRAP3
COX5A
MRPS31
ZNF503
CDX1
GFRA3
NOTCH2NLC
EIF4H
PKDCC
ZSWIM6
EPM2A
RAD50
PIKFYVE
ZBTB17
KAT6A
SDE2
ARL4A
UROD
HECTD3
PSMD3
FBXO41
SMPD1
ZNF414
RFESD
ADAM17
RXRA
STRADA
KEAP1
ACOT2
RWDD2A
PGM3
CPVL
CHN2
MC1R
MTRF1L
WTAP
LSM5
MAGEF1
ERLIN2
CBWD5
CBWD3
NIBAN3
SERPINB1
PRKDC
MCM4
PANK2
ZNF318
ASNS
USPL1
HMGB1
PEX3
ADAT2
TCHP
ATAD3B
UBL7
DYNLT1
VPS37C
C1orf159
TUBB
FXYD2
NOTCH2
OR2L13
MAST2
GPATCH8
NGRN
MCU
FAM120B
RNF103-CHMP3
PNRC2
PHF19
MAPKAPK3
CISH
TCF4
TIGD5
EEF1D
CBWD6
RER1
MORN1
UPP1
ARF3
C18orf32
HOXC6
BUD13
IFNGR1
NIBAN2
DDX23
FAM227B
FABP5
DTWD1
GABRB2
NCBP2AS2
NCBP2
SPIN1
ATAD3A
USP21
NOTCH2NLB
LRCH4
FBXO24
KIF1C
INCA1
KMT5A
CCDC59
CYB5R4
HPF1
DENND1A
TDP2
CNOT6
BHLHE40
ACOT13
NINJ2
RAP1GAP2
NUDT15
ARHGAP45
SYPL1
NANP
YY1AP1
DAP3
C12orf65
UBE2L3
RIMBP3C
RIMBP3B
ARHGEF18
PCMT1
AVL9
CDS2
NMNAT1
LZIC
CEP135
ASB1
SLC7A5
MYCBP2
TSPAN4
POLR2L
ATG5
APBB1IP
CACYBP
CCNL1
SERTAD2
SEH1L
PTDSS1
MTERF3
MFN2
ZCCHC24
GSPT1
ITPRIP
KRI1
EIF3D
C21orf91
SNUPN
LTB4R
LANCL2
EIF5
UNK
ADORA2A
HYLS1
HOXC4
SREBF2
TRAP1
PSMF1
HMGCL
MEPCE
MTMR1
ZNF219
TBX3
RPLP1
RITA1
DDX54
GFER
ASH1L
GTF2H3
EIF2B1
BRAT1
CTSC
DISP3
TLE3
TAS1R1
NOL9
UBIAD1
FDX1
IMPA1
CD63
USP34
TMEM199
POLDIP2
MAPK6
THUMPD3
DLX2
FNTA
NAA40
SLC16A6
LAMP1
MT2A
KDM1A
NOC4L
DDX51
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZNF395
ARHGAP27
MKRN2
ARF4
ZFAND2A
MBD6
PDZD2
NREP
CARMIL1
BRAP
ACAD10
IL6R
POLD2
FKBP1A
EIF1B
PTK2B
LONRF3
PGD
RPS3
ZCWPW1
PGLS
SLC25A6
RPL8
ATG101
TKFC
DDB1
SGK1
MDM2
HNRNPF
CHST11
TNFRSF19
ELOVL6
RIMBP3
GARS1
TMEM65
CDC42
FAF1
DNAH7
DYNC2H1
CSNK1A1
BOD1L1
GFUS
CNPY3
POU2F1
GALE
LCOR
DHRS4L2
DHRS4
DNAJB2
SPRY2
SMIM20
NCKAP5L
SMG6
RERE
FKBP5
EHD1
SPPL2A
UBE2K
PPIL4
CXXC4
MRPL20
MGST1
DENND4B
C6orf89
ABHD12
RCC2
ZBTB45
POLG
SNAPC5
NEURL2
CTSA
PPP4R3B
TPP2
CCDC43
TBL3
ZC3H6
GPCPD1
RAC2
CBX5
PRKAB1
IPP
NUS1
ELMO1
CLCN3
FOS
NCBP3
RBSN
B3GALNT2
MACROH2A1
TMEM41A
SLC35A1
PTP4A2
GFRA1
CD93
TAF12
RAB11FIP1
INTS5
PSTPIP1
CLN5
MRPS28
ZNF593
RNF19A
RGS14
MTCH2
LRRC59
C1orf232
THYN1
RNF216
ETFA
ACAD8
DCP1A
TRAM1
PRR19
PAFAH1B3
PRKAG1
SPDYE14
SPDYE10P
CCDC92
PPP1R8
C15orf61
SPTBN5
SOX12
NDUFV1
MYADM
GATD3B
GATD3A
ZBTB12
MEIS2
SEPTIN2
HDLBP
FAM3C
STARD3
RBM15B
ZNF397
ZBTB25
ZBTB1
FADS2
FADS1
DRAP1
C11orf68
IQSEC1
ATXN2
SECISBP2L
MARCHF7
IDS
ABHD2
ZNF774
UHRF2
ABCF1
SNX15
LGALS1
CNR1
WDR53
SEC13
SCAMP4
FBXO45
CAP1
ARID1A
ADAT3
DTX2
DHDDS
RCN2
OSBPL3
DBI
CYP2W1
C2orf76
SLC43A3
MIDEAS
NOL4L
RAB3D
PSMD9
HPD
BIRC2
RUNX3
CLK1
MT1G
RNF168
PURB
PLAGL1
ADPGK
TRNAU1AP
FOXN2
EXD1
CHP1
NIBAN1
CPQ
ZFAND3
SPATC1
LST1
TESMIN
RNF34
HBS1L
RFC2
MAP2K3
MVK
GNA13
TMEM123
URGCP
ANKRD36C
YARS1
SLC39A7
S100PBP
RXRB
TCTE3
ERMARD
CELF4
CCNL2
SIPA1
SEMA4B
PHF13
ZFPL1
CDCA5
TMEM230
NBN
MESD
EIF3B
DPP8
POLDIP3
ZNF212
KATNA1
NSUN6
ARL5B
TAF15
PKNOX1
ICE2
ZZZ3
CIAO2A
ANKHD1-EIF4EBP3
ANKHD1
CSRNP2
MYL12B
SNAP29
PI4KA
MRPS15
GZF1
ZCCHC4
FES
IGFBP6
CGAS
TRIAP1
FBXL18
RANBP3
HTRA2
C15orf40
UBE2V2
GTF2H2C
GTF2H2C_2
STAU2
REL
RNF138
DDX46
C15orf39
VPS36
TNPO1
FANCE
SRSF2
POLR2J
MFSD11
ZNF3
SDF4
B3GALT6
WASF2
TUBGCP3
METTL23
LZTFL1
JMJD6
CDK11A
ACTR3
ZNF202
SLC25A19
CRLS1
SYNRG
RAB37
KBTBD2
FBXO31